Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CDD entry

There are 5 chains in PDB entry 8CDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 34PRO 716
B
VAL 33TYR 358
C
ASN 159GLN 516
D
ALA 23ARG 229
E
VAL 21PRO 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8CDD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
79 85Right-handed alpha
Helix 2
AA2
A
86 88Right-handed 310
Helix 3
AA3
A
93 101Right-handed alpha
Helix 4
AA4
A
110 115Right-handed alpha
Helix 5
AA5
A
196 211Right-handed alpha
Helix 6
AA6
A
230 234Right-handed 310
Helix 7
AA7
A
324 329Right-handed 310
Helix 8
AA8
A
363 371Right-handed alpha
Helix 9
AA9
A
372 374Right-handed 310
Helix 10
AB1
A
393 396Right-handed 310
Helix 11
AB2
A
429 435Right-handed alpha
Helix 12
AB3
A
455 459Right-handed 310
Helix 13
AB4
A
600 608Right-handed alpha
Helix 14
AB5
A
614 619Right-handed alpha
Helix 15
AB6
A
679 683Right-handed 310
Helix 16
AB7
C
176 194Right-handed alpha
Helix 17
AB8
C
195 201Right-handed 310
Helix 18
AB9
C
202 222Right-handed alpha
Helix 19
AC1
C
224 240Right-handed alpha
Helix 20
AC2
C
305 341Right-handed alpha
Helix 21
AC3
C
355 364Right-handed alpha
Helix 22
AC4
C
364 374Right-handed alpha
Helix 23
AC5
C
375 402Right-handed alpha
Helix 24
AC6
C
404 442Right-handed alpha
Helix 25
AC7
C
443 445Right-handed 310
Helix 26
AC8
C
451 506Right-handed alpha
Helix 27
AC9
D
97 101Right-handed 310
Helix 28
AD1
D
139 143Right-handed 310
Helix 29
AD2
D
200 205Right-handed alpha
Helix 30
AD3
E
48 52Right-handed 310
Helix 31
AD4
E
106 110Right-handed 310
Helix 32
AD5
E
188 190Right-handed 310
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There are 29 sheets in PDB entry 8CDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 63first strand
Strand 2
A
157 158anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 74first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
139 143anti-parallel
Strand 4
A
117 118anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
236 245anti-parallel
Strand 3
A
184 194anti-parallel
Strand 4
B
311 315anti-parallel
Strand 5
B
303 307anti-parallel
Strand 6
B
289 296anti-parallel
Strand 7
B
278 286anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 178first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
272 273first strand
Strand 2
A
283 284anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
336 339first strand
Strand 2
A
346 349anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
387 391first strand
Strand 2
A
466 476anti-parallel
Strand 3
A
405 416anti-parallel
Strand 4
A
426 428anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
387 391first strand
Strand 2
A
466 476anti-parallel
Strand 3
A
381 383anti-parallel
Strand 4
A
560 566anti-parallel
Strand 5
A
629 639anti-parallel
Strand 6
A
579 590anti-parallel
Strand 7
A
597 598anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
398 400first strand
Strand 2
A
442 444anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
649 652first strand
Strand 2
A
657 660anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
689 694first strand
Strand 2
A
698 703anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
708 710first strand
Strand 2
A
713 715anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 37first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
40 44anti-parallel
Strand 4
B
86 89parallel
Strand 5
B
79 82anti-parallel
Strand 6
B
60 63anti-parallel
Strand 7
B
53 55anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 37first strand
Strand 2
B
350 357anti-parallel
Strand 3
B
339 345anti-parallel
Strand 4
B
331 336anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 67first strand
Strand 2
B
75 76anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 151first strand
Strand 2
B
131 138anti-parallel
Strand 3
B
113 119anti-parallel
Strand 4
B
104 110anti-parallel
Strand 5
B
164 166parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
169 170first strand
Strand 2
B
175 182anti-parallel
Strand 3
B
196 201anti-parallel
Strand 4
B
210 216anti-parallel
Strand 5
B
265 270parallel
Strand 6
B
255 262anti-parallel
Strand 7
B
236 243anti-parallel
Strand 8
B
225 233anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
161 164first strand
Strand 2
C
172 175anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 32first strand
Strand 2
D
120 124parallel
Strand 3
D
103 110anti-parallel
Strand 4
D
51 55anti-parallel
Strand 5
D
63 66anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 32first strand
Strand 2
D
120 124parallel
Strand 3
D
103 110anti-parallel
Strand 4
D
113 116anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
38 43first strand
Strand 2
D
88 93anti-parallel
Strand 3
D
80 84anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
132 136first strand
Strand 2
D
148 157anti-parallel
Strand 3
D
191 199anti-parallel
Strand 4
D
178 181anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
171 172first strand
Strand 2
D
164 168anti-parallel
Strand 3
D
209 214anti-parallel
Strand 4
D
223 228anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
22 26first strand
Strand 2
E
36 44anti-parallel
Strand 3
E
97 103anti-parallel
Strand 4
E
87 92anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
30 31first strand
Strand 2
E
139 143parallel
Strand 3
E
111 118anti-parallel
Strand 4
E
54 59anti-parallel
Strand 5
E
65 71anti-parallel
Strand 6
E
77 79anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
30 31first strand
Strand 2
E
139 143parallel
Strand 3
E
111 118anti-parallel
Strand 4
E
132 135anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
168 177first strand
Strand 2
E
208 216anti-parallel
Strand 3
E
195 197anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
168 177first strand
Strand 2
E
208 216anti-parallel
Strand 3
E
201 202anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
183 186first strand
Strand 2
E
227 232anti-parallel
Strand 3
E
237 242anti-parallel
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