Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CDJ entry

There are 5 chains in PDB entry 8CDJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 17	ALA 776
R	LYS 25	TRP 35
D	SER 5	ALA 920
F	SER 96	LEU 416
S	PRO 2	TRP 159

There are103 helices in PDB entry 8CDJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	17	33	Right-handed alpha
Helix 2	AA2	C	38	54	Right-handed alpha
Helix 3	AA3	C	87	108	Right-handed alpha
Helix 4	AA4	C	111	137	Right-handed alpha
Helix 5	AA5	C	137	151	Right-handed alpha
Helix 6	AA6	C	158	171	Right-handed alpha
Helix 7	AA7	C	171	192	Right-handed alpha
Helix 8	AA8	C	197	211	Right-handed alpha
Helix 9	AA9	C	225	232	Right-handed alpha
Helix 10	AB1	C	232	255	Right-handed alpha
Helix 11	AB2	C	256	279	Right-handed alpha
Helix 12	AB3	C	283	296	Right-handed alpha
Helix 13	AB4	C	299	313	Right-handed alpha
Helix 14	AB5	C	315	329	Right-handed alpha
Helix 15	AB6	C	333	356	Right-handed alpha
Helix 16	AB7	C	357	362	Right-handed alpha
Helix 17	AB8	C	362	384	Right-handed alpha
Helix 18	AB9	C	388	405	Right-handed alpha
Helix 19	AC1	C	406	413	Right-handed alpha
Helix 20	AC2	C	416	430	Right-handed alpha
Helix 21	AC3	C	438	455	Right-handed alpha
Helix 22	AC4	C	458	477	Right-handed alpha
Helix 23	AC5	C	481	496	Right-handed alpha
Helix 24	AC6	C	497	525	Right-handed alpha
Helix 25	AC7	C	556	558	Right-handed 310
Helix 26	AC8	C	559	574	Right-handed alpha
Helix 27	AC9	C	604	614	Right-handed alpha
Helix 28	AD1	C	622	630	Right-handed alpha
Helix 29	AD2	C	632	646	Right-handed alpha
Helix 30	AD3	C	690	722	Right-handed alpha
Helix 31	AD4	C	727	738	Right-handed alpha
Helix 32	AD5	C	745	759	Right-handed alpha
Helix 33	AD6	D	6	15	Right-handed alpha
Helix 34	AD7	D	19	34	Right-handed alpha
Helix 35	AD8	D	44	56	Right-handed alpha
Helix 36	AD9	D	57	59	Right-handed 310
Helix 37	AE1	D	61	71	Right-handed alpha
Helix 38	AE2	D	71	78	Right-handed alpha
Helix 39	AE3	D	80	96	Right-handed alpha
Helix 40	AE4	D	99	116	Right-handed alpha
Helix 41	AE5	D	128	144	Right-handed alpha
Helix 42	AE6	D	147	164	Right-handed alpha
Helix 43	AE7	D	166	171	Right-handed 310
Helix 44	AE8	D	172	181	Right-handed alpha
Helix 45	AE9	D	182	186	Right-handed 310
Helix 46	AF1	D	188	205	Right-handed alpha
Helix 47	AF2	D	207	224	Right-handed alpha
Helix 48	AF3	D	227	246	Right-handed alpha
Helix 49	AF4	D	247	251	Right-handed 310
Helix 50	AF5	D	252	265	Right-handed alpha
Helix 51	AF6	D	268	286	Right-handed alpha
Helix 52	AF7	D	286	291	Right-handed alpha
Helix 53	AF8	D	293	305	Right-handed alpha
Helix 54	AF9	D	345	362	Right-handed alpha
Helix 55	AG1	D	367	382	Right-handed alpha
Helix 56	AG2	D	383	385	Right-handed 310
Helix 57	AG3	D	387	406	Right-handed alpha
Helix 58	AG4	D	424	443	Right-handed alpha
Helix 59	AG5	D	447	465	Right-handed alpha
Helix 60	AG6	D	472	485	Right-handed alpha
Helix 61	AG7	D	490	507	Right-handed alpha
Helix 62	AG8	D	516	529	Right-handed alpha
Helix 63	AG9	D	532	551	Right-handed alpha
Helix 64	AH1	D	561	577	Right-handed alpha
Helix 65	AH2	D	582	600	Right-handed alpha
Helix 66	AH3	D	604	606	Right-handed 310
Helix 67	AH4	D	607	619	Right-handed alpha
Helix 68	AH5	D	624	636	Right-handed alpha
Helix 69	AH6	D	644	658	Right-handed alpha
Helix 70	AH7	D	663	681	Right-handed alpha
Helix 71	AH8	D	686	701	Right-handed alpha
Helix 72	AH9	D	705	723	Right-handed alpha
Helix 73	AI1	D	724	731	Right-handed 310
Helix 74	AI2	D	732	743	Right-handed alpha
Helix 75	AI3	D	749	766	Right-handed alpha
Helix 76	AI4	D	771	786	Right-handed alpha
Helix 77	AI5	D	792	810	Right-handed alpha
Helix 78	AI6	D	813	823	Right-handed alpha
Helix 79	AI7	D	834	846	Right-handed alpha
Helix 80	AI8	D	857	866	Right-handed alpha
Helix 81	AI9	D	869	885	Right-handed alpha
Helix 82	AJ1	D	891	902	Right-handed alpha
Helix 83	AJ2	D	906	919	Right-handed alpha
Helix 84	AJ3	F	101	110	Right-handed alpha
Helix 85	AJ4	F	113	121	Right-handed alpha
Helix 86	AJ5	F	124	132	Right-handed alpha
Helix 87	AJ6	F	148	158	Right-handed alpha
Helix 88	AJ7	F	194	203	Right-handed alpha
Helix 89	AJ8	F	219	227	Right-handed alpha
Helix 90	AJ9	F	244	255	Right-handed alpha
Helix 91	AK1	F	270	280	Right-handed alpha
Helix 92	AK2	F	298	309	Right-handed alpha
Helix 93	AK3	F	324	334	Right-handed alpha
Helix 94	AK4	F	349	359	Right-handed 310
Helix 95	AK5	F	374	383	Right-handed alpha
Helix 96	AK6	S	20	23	Right-handed 310
Helix 97	AK7	S	24	33	Right-handed alpha
Helix 98	AK8	S	51	65	Right-handed alpha
Helix 99	AK9	S	87	94	Right-handed alpha
Helix 100	AL1	S	96	111	Right-handed alpha
Helix 101	AL2	S	112	128	Right-handed alpha
Helix 102	AL3	S	131	139	Right-handed alpha
Helix 103	AL4	S	146	157	Right-handed alpha

There are 8 sheets in PDB entry 8CDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	541	first strand
Strand 2	R	27	34	parallel
Strand 3	C	578	588	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	600	602	first strand
Strand 2	C	681	683	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	620	621	first strand
Strand 2	C	668	669	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	726	first strand
Strand 2	C	771	774	anti-parallel
Strand 3	C	762	763	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	141	first strand
Strand 2	F	162	164	parallel
Strand 3	F	185	187	parallel
Strand 4	F	210	212	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	262	first strand
Strand 2	F	287	289	parallel
Strand 3	F	314	316	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	364	366	parallel
Strand 3	F	387	388	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	13	17	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CDJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDJ