Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CDK entry

There are 5 chains in PDB entry 8CDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 15	ALA 776
D	SER 5	GLN 1216
R	ARG 21	TYR 106
S	SER 3	TRP 159
F	SER 96	LEU 416

There are131 helices in PDB entry 8CDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	33	Right-handed alpha
Helix 2	AA2	C	38	55	Right-handed alpha
Helix 3	AA3	C	85	106	Right-handed alpha
Helix 4	AA4	C	112	137	Right-handed alpha
Helix 5	AA5	C	137	143	Right-handed alpha
Helix 6	AA6	C	143	151	Right-handed alpha
Helix 7	AA7	C	158	171	Right-handed alpha
Helix 8	AA8	C	171	193	Right-handed alpha
Helix 9	AA9	C	197	212	Right-handed alpha
Helix 10	AB1	C	225	232	Right-handed alpha
Helix 11	AB2	C	232	255	Right-handed alpha
Helix 12	AB3	C	256	279	Right-handed alpha
Helix 13	AB4	C	280	282	Right-handed 310
Helix 14	AB5	C	283	297	Right-handed alpha
Helix 15	AB6	C	299	313	Right-handed alpha
Helix 16	AB7	C	315	327	Right-handed alpha
Helix 17	AB8	C	333	354	Right-handed alpha
Helix 18	AB9	C	355	356	Right-handed 310
Helix 19	AC1	C	357	361	Right-handed 310
Helix 20	AC2	C	362	385	Right-handed alpha
Helix 21	AC3	C	388	405	Right-handed alpha
Helix 22	AC4	C	406	413	Right-handed alpha
Helix 23	AC5	C	416	431	Right-handed alpha
Helix 24	AC6	C	441	454	Right-handed alpha
Helix 25	AC7	C	458	477	Right-handed alpha
Helix 26	AC8	C	481	496	Right-handed alpha
Helix 27	AC9	C	498	526	Right-handed alpha
Helix 28	AD1	C	556	558	Right-handed 310
Helix 29	AD2	C	559	574	Right-handed alpha
Helix 30	AD3	C	605	610	Right-handed alpha
Helix 31	AD4	C	622	630	Right-handed alpha
Helix 32	AD5	C	632	646	Right-handed alpha
Helix 33	AD6	C	690	722	Right-handed alpha
Helix 34	AD7	C	727	739	Right-handed alpha
Helix 35	AD8	C	745	759	Right-handed alpha
Helix 36	AD9	D	6	15	Right-handed alpha
Helix 37	AE1	D	19	36	Right-handed alpha
Helix 38	AE2	D	43	57	Right-handed alpha
Helix 39	AE3	D	61	79	Right-handed alpha
Helix 40	AE4	D	80	96	Right-handed alpha
Helix 41	AE5	D	99	116	Right-handed alpha
Helix 42	AE6	D	128	143	Right-handed alpha
Helix 43	AE7	D	147	164	Right-handed alpha
Helix 44	AE8	D	172	184	Right-handed alpha
Helix 45	AE9	D	188	205	Right-handed alpha
Helix 46	AF1	D	207	224	Right-handed alpha
Helix 47	AF2	D	227	246	Right-handed alpha
Helix 48	AF3	D	247	251	Right-handed 310
Helix 49	AF4	D	252	264	Right-handed alpha
Helix 50	AF5	D	268	286	Right-handed alpha
Helix 51	AF6	D	290	292	Right-handed 310
Helix 52	AF7	D	293	306	Right-handed alpha
Helix 53	AF8	D	346	362	Right-handed alpha
Helix 54	AF9	D	364	366	Right-handed 310
Helix 55	AG1	D	367	375	Right-handed alpha
Helix 56	AG2	D	375	382	Right-handed alpha
Helix 57	AG3	D	383	385	Right-handed 310
Helix 58	AG4	D	387	406	Right-handed alpha
Helix 59	AG5	D	424	443	Right-handed alpha
Helix 60	AG6	D	447	465	Right-handed alpha
Helix 61	AG7	D	469	471	Right-handed 310
Helix 62	AG8	D	472	485	Right-handed alpha
Helix 63	AG9	D	490	507	Right-handed alpha
Helix 64	AH1	D	516	529	Right-handed alpha
Helix 65	AH2	D	532	551	Right-handed alpha
Helix 66	AH3	D	563	577	Right-handed alpha
Helix 67	AH4	D	582	601	Right-handed alpha
Helix 68	AH5	D	606	621	Right-handed alpha
Helix 69	AH6	D	625	637	Right-handed alpha
Helix 70	AH7	D	644	658	Right-handed alpha
Helix 71	AH8	D	659	661	Right-handed 310
Helix 72	AH9	D	663	681	Right-handed alpha
Helix 73	AI1	D	686	697	Right-handed alpha
Helix 74	AI2	D	698	701	Right-handed 310
Helix 75	AI3	D	705	723	Right-handed alpha
Helix 76	AI4	D	724	730	Right-handed 310
Helix 77	AI5	D	732	743	Right-handed alpha
Helix 78	AI6	D	749	766	Right-handed alpha
Helix 79	AI7	D	771	786	Right-handed alpha
Helix 80	AI8	D	793	810	Right-handed alpha
Helix 81	AI9	D	813	827	Right-handed alpha
Helix 82	AJ1	D	831	847	Right-handed alpha
Helix 83	AJ2	D	856	864	Right-handed alpha
Helix 84	AJ3	D	869	887	Right-handed alpha
Helix 85	AJ4	D	887	902	Right-handed alpha
Helix 86	AJ5	D	906	920	Right-handed alpha
Helix 87	AJ6	D	921	926	Right-handed alpha
Helix 88	AJ7	D	928	939	Right-handed alpha
Helix 89	AJ8	D	946	961	Right-handed alpha
Helix 90	AJ9	D	962	973	Right-handed alpha
Helix 91	AK1	D	978	990	Right-handed alpha
Helix 92	AK2	D	991	993	Right-handed 310
Helix 93	AK3	D	1000	1013	Right-handed alpha
Helix 94	AK4	D	1019	1037	Right-handed alpha
Helix 95	AK5	D	1038	1041	Right-handed 310
Helix 96	AK6	D	1042	1043	Right-handed 310
Helix 97	AK7	D	1044	1057	Right-handed alpha
Helix 98	AK8	D	1059	1063	Right-handed 310
Helix 99	AK9	D	1078	1096	Right-handed alpha
Helix 100	AL1	D	1101	1114	Right-handed alpha
Helix 101	AL2	D	1116	1133	Right-handed alpha
Helix 102	AL3	D	1134	1139	Right-handed alpha
Helix 103	AL4	D	1141	1154	Right-handed alpha
Helix 104	AL5	D	1162	1185	Right-handed alpha
Helix 105	AL6	D	1192	1205	Right-handed alpha
Helix 106	AL7	D	1205	1216	Right-handed alpha
Helix 107	AL8	R	53	59	Right-handed alpha
Helix 108	AL9	R	62	67	Right-handed alpha
Helix 109	AM1	R	81	88	Right-handed alpha
Helix 110	AM2	S	17	22	Right-handed alpha
Helix 111	AM3	S	24	34	Right-handed alpha
Helix 112	AM4	S	51	65	Right-handed alpha
Helix 113	AM5	S	87	94	Right-handed alpha
Helix 114	AM6	S	96	110	Right-handed alpha
Helix 115	AM7	S	112	128	Right-handed alpha
Helix 116	AM8	S	131	140	Right-handed alpha
Helix 117	AM9	S	146	159	Right-handed alpha
Helix 118	AN1	F	101	109	Right-handed alpha
Helix 119	AN2	F	110	112	Right-handed 310
Helix 120	AN3	F	113	122	Right-handed alpha
Helix 121	AN4	F	124	132	Right-handed alpha
Helix 122	AN5	F	135	137	Right-handed 310
Helix 123	AN6	F	148	158	Right-handed alpha
Helix 124	AN7	F	194	203	Right-handed alpha
Helix 125	AN8	F	219	227	Right-handed alpha
Helix 126	AN9	F	244	255	Right-handed alpha
Helix 127	AO1	F	270	280	Right-handed alpha
Helix 128	AO2	F	298	309	Right-handed alpha
Helix 129	AO3	F	324	334	Right-handed alpha
Helix 130	AO4	F	349	359	Right-handed 310
Helix 131	AO5	F	374	383	Right-handed alpha

There are 8 sheets in PDB entry 8CDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	541	first strand
Strand 2	R	22	35	parallel
Strand 3	C	577	592	anti-parallel
Strand 4	C	600	604	anti-parallel
Strand 5	C	682	683	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	668	671	anti-parallel
Strand 3	C	649	650	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	726	first strand
Strand 2	C	771	774	anti-parallel
Strand 3	C	762	764	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	80	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	103	105	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	16	first strand
Strand 2	S	4	7	anti-parallel
Strand 3	S	45	46	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	141	first strand
Strand 2	F	162	164	parallel
Strand 3	F	185	187	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	262	first strand
Strand 2	F	287	289	parallel
Strand 3	F	314	316	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	364	366	parallel
Strand 3	F	387	388	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDK