Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CDQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 8CDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 18
A
 ASN 20GLN 818
B
 GLU 28GLN 158
C
 ALA 2ILE 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8CDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
41 47Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
109 122Right-handed alpha
Helix 7
AA7
A
147 157Right-handed alpha
Helix 8
AA8
A
159 163Right-handed 310
Helix 9
AA9
A
166 182Right-handed alpha
Helix 10
AB1
A
196 209Right-handed alpha
Helix 11
AB2
A
217 235Right-handed alpha
Helix 12
AB3
A
273 278Right-handed 310
Helix 13
AB4
A
287 297Right-handed alpha
Helix 14
AB5
A
298 306Right-handed alpha
Helix 15
AB6
A
309 313Right-handed 310
Helix 16
AB7
A
327 342Right-handed alpha
Helix 17
AB8
A
345 363Right-handed alpha
Helix 18
AB9
A
385 396Right-handed alpha
Helix 19
AC1
A
399 408Right-handed alpha
Helix 20
AC2
A
424 456Right-handed alpha
Helix 21
AC3
A
480 513Right-handed alpha
Helix 22
AC4
A
524 533Right-handed alpha
Helix 23
AC5
A
537 548Right-handed alpha
Helix 24
AC6
A
552 564Right-handed alpha
Helix 25
AC7
A
596 602Right-handed alpha
Helix 26
AC8
A
607 615Right-handed alpha
Helix 27
AC9
A
618 625Right-handed alpha
Helix 28
AD1
A
636 639Right-handed 310
Helix 29
AD2
A
640 658Right-handed alpha
Helix 30
AD3
A
679 690Right-handed alpha
Helix 31
AD4
A
691 701Right-handed alpha
Helix 32
AD5
A
709 717Right-handed alpha
Helix 33
AD6
A
720 725Right-handed alpha
Helix 34
AD7
A
730 741Right-handed alpha
Helix 35
AD8
A
745 747Right-handed 310
Helix 36
AD9
A
759 773Right-handed alpha
Helix 37
AE1
A
774 776Right-handed 310
Helix 38
AE2
A
777 800Right-handed alpha
Helix 39
AE3
A
800 817Right-handed alpha
Helix 40
AE4
B
29 39Right-handed alpha
Helix 41
AE5
B
46 56Right-handed alpha
Helix 42
AE6
B
61 73Right-handed alpha
Helix 43
AE7
B
77 88Right-handed alpha
Helix 44
AE8
B
94 99Right-handed alpha
Helix 45
AE9
B
99 105Right-handed alpha
Helix 46
AF1
B
115 125Right-handed alpha
Helix 47
AF2
B
130 140Right-handed alpha
Helix 48
AF3
B
149 157Right-handed alpha
Helix 49
AF4
C
5 18Right-handed alpha
Helix 50
AF5
C
24 35Right-handed alpha
Helix 51
AF6
C
40 46Right-handed alpha
Helix 52
AF7
C
53 64Right-handed alpha
Helix 53
AF8
C
87 97Right-handed alpha
Helix 54
AF9
C
102 114Right-handed alpha
Helix 55
AG1
C
123 133Right-handed alpha
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There are 11 sheets in PDB entry 8CDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
35 38anti-parallel
Strand 5
A
87 88anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
660 667parallel
Strand 4
A
185 191parallel
Strand 5
A
465 471parallel
Strand 6
A
249 256anti-parallel
Strand 7
A
262 270anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
245 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
378 381anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 414first strand
Strand 2
A
417 422anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
580 585anti-parallel
Strand 3
A
588 593anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 708first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
749 751anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
146 148anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
51 52anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
120 122anti-parallel
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