Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CDV entry

There are 19 chains in PDB entry 8CDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 8	G 1379
B	A -1	A 9
C	LYS 3	ASP 616
F	ALA 2	ARG 200
G	ASP 5	GLU 162
H	TYR 18	ALA 128
I	VAL 2	TRP 132
J	GLN 5	ARG 106
K	ILE 6	ILE 100
L	PRO 2	ALA 137
M	ARG 3	LYS 110
O	THR 4	ARG 88
P	ALA 2	GLY 89
Q	SER 2	VAL 85
R	SER 4	LYS 81
S	ILE 4	LEU 86
T	LYS 3	GLU 94
U	LYS 14	SER 77
V	ILE 18	VAL 109

There are 83 helices in PDB entry 8CDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	3	16	Right-handed alpha
Helix 2	AA2	C	23	31	Right-handed alpha
Helix 3	AA3	C	35	52	Right-handed alpha
Helix 4	AA4	C	228	236	Right-handed alpha
Helix 5	AA5	C	241	246	Right-handed 310
Helix 6	AA6	C	289	294	Right-handed alpha
Helix 7	AA7	C	298	308	Right-handed alpha
Helix 8	AA8	C	322	327	Right-handed alpha
Helix 9	AA9	C	371	379	Right-handed alpha
Helix 10	AB1	C	382	389	Right-handed alpha
Helix 11	AB2	C	392	413	Right-handed alpha
Helix 12	AB3	C	442	467	Right-handed alpha
Helix 13	AB4	C	479	493	Right-handed alpha
Helix 14	AB5	C	500	504	Right-handed 310
Helix 15	AB6	C	505	517	Right-handed alpha
Helix 16	AB7	C	521	533	Right-handed alpha
Helix 17	AB8	C	545	549	Right-handed 310
Helix 18	AB9	C	562	576	Right-handed alpha
Helix 19	AC1	C	582	616	Right-handed alpha
Helix 20	AC2	F	7	16	Right-handed alpha
Helix 21	AC3	F	47	62	Right-handed alpha
Helix 22	AC4	F	64	78	Right-handed alpha
Helix 23	AC5	F	81	92	Right-handed alpha
Helix 24	AC6	F	93	101	Right-handed alpha
Helix 25	AC7	F	106	116	Right-handed alpha
Helix 26	AC8	F	143	146	Right-handed 310
Helix 27	AC9	F	148	154	Right-handed alpha
Helix 28	AD1	F	190	200	Right-handed alpha
Helix 29	AD2	G	5	9	Right-handed 310
Helix 30	AD3	G	55	70	Right-handed alpha
Helix 31	AD4	G	108	119	Right-handed alpha
Helix 32	AD5	G	132	145	Right-handed alpha
Helix 33	AD6	G	149	158	Right-handed alpha
Helix 34	AD7	H	20	31	Right-handed alpha
Helix 35	AD8	H	35	55	Right-handed alpha
Helix 36	AD9	H	57	69	Right-handed alpha
Helix 37	AE1	H	93	111	Right-handed alpha
Helix 38	AE2	H	115	128	Right-handed alpha
Helix 39	AE3	I	5	20	Right-handed alpha
Helix 40	AE4	I	30	43	Right-handed alpha
Helix 41	AE5	I	90	94	Right-handed 310
Helix 42	AE6	I	97	101	Right-handed 310
Helix 43	AE7	I	115	121	Right-handed alpha
Helix 44	AE8	J	34	39	Right-handed alpha
Helix 45	AE9	J	41	55	Right-handed alpha
Helix 46	AF1	J	71	91	Right-handed alpha
Helix 47	AF2	J	94	101	Right-handed alpha
Helix 48	AF3	K	14	32	Right-handed alpha
Helix 49	AF4	K	80	89	Right-handed alpha
Helix 50	AF5	L	3	10	Right-handed alpha
Helix 51	AF6	L	21	24	Right-handed 310
Helix 52	AF7	L	126	131	Right-handed 310
Helix 53	AF8	M	14	20	Right-handed alpha
Helix 54	AF9	M	26	38	Right-handed alpha
Helix 55	AG1	M	44	48	Right-handed 310
Helix 56	AG2	M	49	62	Right-handed alpha
Helix 57	AG3	M	65	83	Right-handed alpha
Helix 58	AG4	M	85	93	Right-handed alpha
Helix 59	AG5	O	5	16	Right-handed alpha
Helix 60	AG6	O	24	46	Right-handed alpha
Helix 61	AG7	O	49	74	Right-handed alpha
Helix 62	AG8	O	74	86	Right-handed alpha
Helix 63	AG9	P	52	63	Right-handed alpha
Helix 64	AH1	P	67	77	Right-handed alpha
Helix 65	AH2	P	78	89	Right-handed alpha
Helix 66	AH3	R	12	25	Right-handed alpha
Helix 67	AH4	R	41	45	Right-handed 310
Helix 68	AH5	R	63	67	Right-handed 310
Helix 69	AH6	R	70	75	Right-handed 310
Helix 70	AH7	S	5	41	Right-handed alpha
Helix 71	AH8	S	43	64	Right-handed alpha
Helix 72	AH9	S	68	85	Right-handed alpha
Helix 73	AI1	T	15	33	Right-handed alpha
Helix 74	AI2	T	68	82	Right-handed alpha
Helix 75	AI3	U	16	21	Right-handed alpha
Helix 76	AI4	U	30	35	Right-handed alpha
Helix 77	AI5	U	36	38	Right-handed 310
Helix 78	AI6	U	46	51	Right-handed alpha
Helix 79	AI7	U	53	70	Right-handed alpha
Helix 80	AI8	V	50	53	Right-handed 310
Helix 81	AI9	V	56	61	Right-handed alpha
Helix 82	AJ1	V	61	80	Right-handed alpha
Helix 83	AJ2	V	93	105	Right-handed alpha

There are 21 sheets in PDB entry 8CDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	63	64	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	353	364	parallel
Strand 3	C	337	347	anti-parallel
Strand 4	C	281	288	anti-parallel
Strand 5	C	269	275	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	367	370	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	317	318	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	427	first strand
Strand 2	C	433	439	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	474	first strand
Strand 2	C	537	539	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	119	121	anti-parallel
Strand 3	F	138	141	anti-parallel
Strand 4	F	173	176	anti-parallel
Strand 5	F	165	166	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	25	first strand
Strand 2	G	28	40	anti-parallel
Strand 3	G	45	53	anti-parallel
Strand 4	G	72	73	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	89	first strand
Strand 2	G	92	98	anti-parallel
Strand 3	G	123	127	anti-parallel
Strand 4	G	105	106	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	28	first strand
Strand 2	I	59	64	anti-parallel
Strand 3	I	46	52	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	125	132	anti-parallel
Strand 3	I	88	89	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	125	132	anti-parallel
Strand 3	I	103	107	anti-parallel
Strand 4	I	112	114	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	12	first strand
Strand 2	J	15	23	anti-parallel
Strand 3	J	61	68	anti-parallel
Strand 4	J	28	30	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	75	first strand
Strand 2	K	7	12	anti-parallel
Strand 3	K	96	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	34	37	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	53	first strand
Strand 2	L	63	70	anti-parallel
Strand 3	L	75	79	anti-parallel
Strand 4	L	108	110	parallel
Strand 5	L	92	97	anti-parallel
Strand 6	L	42	53	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	48	51	first strand
Strand 2	P	35	41	anti-parallel
Strand 3	P	15	24	anti-parallel
Strand 4	P	3	12	anti-parallel
Strand 5	P	65	66	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	19	first strand
Strand 2	Q	22	32	anti-parallel
Strand 3	Q	39	49	anti-parallel
Strand 4	Q	73	82	parallel
Strand 5	Q	60	65	anti-parallel
Strand 6	Q	9	19	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	31	33	first strand
Strand 2	R	48	52	parallel
Strand 3	R	57	61	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	36	52	first strand
Strand 2	T	55	66	anti-parallel
Strand 3	T	4	10	anti-parallel
Strand 4	T	85	92	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	43	48	first strand
Strand 2	V	32	37	anti-parallel
Strand 3	V	20	27	anti-parallel
Strand 4	V	83	89	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CDV