Analysis of interatomic Contacts of Structural Units in PDB entry:
8CE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CE8 entry

There are 9 chains in PDB entry 8CE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 203
B
 MET 2GLN 220
C
 LYS 3GLY 243
D
 THR 2ALA 69
a
 MET 1GLN 203
b
 MET 2GLN 220
c
 LYS 3GLY 243
d
 THR 2ALA 69
E
 ASN 2SER 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8CE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
111 116Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
130 141Right-handed alpha
Helix 7
AA7
A
142 145Right-handed 310
Helix 8
AA8
A
160 177Right-handed alpha
Helix 9
AA9
B
3 17Right-handed alpha
Helix 10
AB1
B
18 21Right-handed 310
Helix 11
AB2
B
22 40Right-handed alpha
Helix 12
AB3
B
42 66Right-handed alpha
Helix 13
AB4
B
66 77Right-handed alpha
Helix 14
AB5
B
77 84Right-handed alpha
Helix 15
AB6
B
88 120Right-handed alpha
Helix 16
AB7
B
122 151Right-handed alpha
Helix 17
AB8
B
158 169Right-handed alpha
Helix 18
AB9
B
169 185Right-handed alpha
Helix 19
AC1
B
189 220Right-handed alpha
Helix 20
AC2
C
4 8Right-handed alpha
Helix 21
AC3
C
10 42Right-handed alpha
Helix 22
AC4
C
50 54Right-handed 310
Helix 23
AC5
C
55 83Right-handed alpha
Helix 24
AC6
C
86 120Right-handed alpha
Helix 25
AC7
C
126 149Right-handed alpha
Helix 26
AC8
C
151 181Right-handed alpha
Helix 27
AC9
C
199 229Right-handed alpha
Helix 28
AD1
C
232 242Right-handed alpha
Helix 29
AD2
D
7 12Right-handed alpha
Helix 30
AD3
D
18 69Right-handed alpha
Helix 31
AD4
a
41 50Right-handed alpha
Helix 32
AD5
a
70 75Right-handed alpha
Helix 33
AD6
a
92 100Right-handed alpha
Helix 34
AD7
a
111 116Right-handed alpha
Helix 35
AD8
a
125 129Right-handed 310
Helix 36
AD9
a
130 141Right-handed alpha
Helix 37
AE1
a
142 144Right-handed 310
Helix 38
AE2
a
160 177Right-handed alpha
Helix 39
AE3
b
3 17Right-handed alpha
Helix 40
AE4
b
18 40Right-handed alpha
Helix 41
AE5
b
42 66Right-handed alpha
Helix 42
AE6
b
67 69Right-handed 310
Helix 43
AE7
b
70 77Right-handed alpha
Helix 44
AE8
b
77 84Right-handed alpha
Helix 45
AE9
b
88 119Right-handed alpha
Helix 46
AF1
b
122 151Right-handed alpha
Helix 47
AF2
b
158 185Right-handed alpha
Helix 48
AF3
b
190 220Right-handed alpha
Helix 49
AF4
c
6 9Right-handed 310
Helix 50
AF5
c
10 41Right-handed alpha
Helix 51
AF6
c
50 54Right-handed 310
Helix 52
AF7
c
55 83Right-handed alpha
Helix 53
AF8
c
86 120Right-handed alpha
Helix 54
AF9
c
126 149Right-handed alpha
Helix 55
AG1
c
151 185Right-handed alpha
Helix 56
AG2
c
198 229Right-handed alpha
Helix 57
AG3
c
232 242Right-handed alpha
Helix 58
AG4
d
7 12Right-handed alpha
Helix 59
AG5
d
17 69Right-handed alpha
Helix 60
AG6
E
3 32Right-handed alpha
Helix 61
AG7
E
39 45Right-handed alpha
Helix 62
AG8
E
136 146Right-handed alpha
Helix 63
AG9
E
150 155Right-handed alpha
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There are 8 sheets in PDB entry 8CE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 26first strand
Strand 2
A
4 13anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
65 66anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
149 153parallel
Strand 3
A
180 184parallel
Strand 4
A
32 34parallel
Strand 5
A
197 199parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
17 22first strand
Strand 2
a
4 12anti-parallel
Strand 3
a
25 26anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
17 22first strand
Strand 2
a
4 12anti-parallel
Strand 3
a
57 62anti-parallel
Strand 4
a
65 66anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
32 34first strand
Strand 2
a
197 199parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
78 81first strand
Strand 2
a
149 153parallel
Strand 3
a
180 184parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 38first strand
Strand 2
E
59 66parallel
Strand 3
E
79 85anti-parallel
Strand 4
E
72 73anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 38first strand
Strand 2
E
59 66parallel
Strand 3
E
108 116anti-parallel
Strand 4
E
120 128anti-parallel
Strand 5
E
90 96parallel
Strand 6
E
79 85anti-parallel
Strand 7
E
72 73anti-parallel
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