Analysis of interatomic Contacts of Structural Units in PDB entry:
8CEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CEE entry

There are 22 chains in PDB entry 8CEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 8	C 1397
B	A 9002	A 9008
C	LYS 3	MET 710
D	LEU 9	GLN 226
F	ALA 2	ARG 200
G	ASP 5	GLU 162
I	VAL 2	TRP 132
L	PRO 2	ALA 137
O	THR 4	ARG 88
P	ALA 2	GLY 89
Q	SER 2	VAL 85
S	ILE 4	LEU 86
T	MET 1	GLU 95
U	LYS 14	SER 77
V	ASN 17	PRO 117
E	GLN 3	LEU 207
H	LYS 4	ALA 152
J	GLN 5	GLU 112
K	ILE 6	ILE 100
M	ARG 3	LYS 110
N	THR 13	TRP 61
R	SER 4	LYS 81

There are 98 helices in PDB entry 8CEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	3	15	Right-handed alpha
Helix 2	AA2	C	23	31	Right-handed alpha
Helix 3	AA3	C	35	52	Right-handed alpha
Helix 4	AA4	C	99	103	Right-handed 310
Helix 5	AA5	C	167	171	Right-handed 310
Helix 6	AA6	C	209	219	Right-handed alpha
Helix 7	AA7	C	226	236	Right-handed alpha
Helix 8	AA8	C	241	246	Right-handed 310
Helix 9	AA9	C	289	294	Right-handed alpha
Helix 10	AB1	C	298	308	Right-handed alpha
Helix 11	AB2	C	322	328	Right-handed alpha
Helix 12	AB3	C	371	379	Right-handed alpha
Helix 13	AB4	C	382	389	Right-handed alpha
Helix 14	AB5	C	392	414	Right-handed alpha
Helix 15	AB6	C	442	467	Right-handed alpha
Helix 16	AB7	C	479	493	Right-handed alpha
Helix 17	AB8	C	500	504	Right-handed 310
Helix 18	AB9	C	505	516	Right-handed alpha
Helix 19	AC1	C	521	531	Right-handed alpha
Helix 20	AC2	C	562	576	Right-handed alpha
Helix 21	AC3	C	582	624	Right-handed alpha
Helix 22	AC4	C	625	627	Right-handed 310
Helix 23	AC5	C	658	660	Right-handed 310
Helix 24	AC6	D	24	29	Right-handed 310
Helix 25	AC7	D	42	63	Right-handed alpha
Helix 26	AC8	D	73	88	Right-handed alpha
Helix 27	AC9	D	103	123	Right-handed alpha
Helix 28	AD1	D	124	128	Right-handed 310
Helix 29	AD2	D	131	149	Right-handed alpha
Helix 30	AD3	D	150	152	Right-handed 310
Helix 31	AD4	D	169	179	Right-handed alpha
Helix 32	AD5	D	192	196	Right-handed 310
Helix 33	AD6	D	206	226	Right-handed alpha
Helix 34	AD7	F	7	16	Right-handed alpha
Helix 35	AD8	F	47	62	Right-handed alpha
Helix 36	AD9	F	64	78	Right-handed alpha
Helix 37	AE1	F	81	92	Right-handed alpha
Helix 38	AE2	F	93	101	Right-handed alpha
Helix 39	AE3	F	106	117	Right-handed alpha
Helix 40	AE4	F	148	154	Right-handed alpha
Helix 41	AE5	F	190	200	Right-handed alpha
Helix 42	AE6	G	55	70	Right-handed alpha
Helix 43	AE7	G	108	119	Right-handed alpha
Helix 44	AE8	G	132	147	Right-handed alpha
Helix 45	AE9	G	149	158	Right-handed alpha
Helix 46	AF1	I	5	20	Right-handed alpha
Helix 47	AF2	I	30	43	Right-handed alpha
Helix 48	AF3	I	97	101	Right-handed 310
Helix 49	AF4	I	115	121	Right-handed alpha
Helix 50	AF5	L	3	10	Right-handed alpha
Helix 51	AF6	L	21	25	Right-handed alpha
Helix 52	AF7	L	127	131	Right-handed 310
Helix 53	AF8	O	5	16	Right-handed alpha
Helix 54	AF9	O	24	46	Right-handed alpha
Helix 55	AG1	O	49	74	Right-handed alpha
Helix 56	AG2	O	74	86	Right-handed alpha
Helix 57	AG3	P	52	63	Right-handed alpha
Helix 58	AG4	P	67	78	Right-handed alpha
Helix 59	AG5	P	78	88	Right-handed alpha
Helix 60	AG6	S	5	41	Right-handed alpha
Helix 61	AG7	S	43	64	Right-handed alpha
Helix 62	AG8	S	68	85	Right-handed alpha
Helix 63	AG9	T	15	33	Right-handed alpha
Helix 64	AH1	T	68	82	Right-handed alpha
Helix 65	AH2	U	16	21	Right-handed alpha
Helix 66	AH3	U	30	36	Right-handed alpha
Helix 67	AH4	U	46	51	Right-handed alpha
Helix 68	AH5	U	53	70	Right-handed alpha
Helix 69	AH6	V	50	53	Right-handed 310
Helix 70	AH7	V	61	79	Right-handed alpha
Helix 71	AH8	V	93	105	Right-handed alpha
Helix 72	AH9	E	6	12	Right-handed alpha
Helix 73	AI1	E	27	46	Right-handed alpha
Helix 74	AI2	E	71	77	Right-handed alpha
Helix 75	AI3	E	80	95	Right-handed alpha
Helix 76	AI4	E	111	125	Right-handed alpha
Helix 77	AI5	E	128	144	Right-handed alpha
Helix 78	AI6	H	20	31	Right-handed alpha
Helix 79	AI7	H	35	55	Right-handed alpha
Helix 80	AI8	H	57	70	Right-handed alpha
Helix 81	AI9	H	92	111	Right-handed alpha
Helix 82	AJ1	H	115	129	Right-handed alpha
Helix 83	AJ2	H	133	148	Right-handed alpha
Helix 84	AJ3	J	34	39	Right-handed alpha
Helix 85	AJ4	J	41	55	Right-handed alpha
Helix 86	AJ5	J	71	91	Right-handed alpha
Helix 87	AJ6	J	94	101	Right-handed alpha
Helix 88	AJ7	K	14	33	Right-handed alpha
Helix 89	AJ8	K	80	90	Right-handed alpha
Helix 90	AJ9	M	14	21	Right-handed alpha
Helix 91	AK1	M	26	37	Right-handed alpha
Helix 92	AK2	M	49	62	Right-handed alpha
Helix 93	AK3	M	66	82	Right-handed alpha
Helix 94	AK4	M	85	94	Right-handed alpha
Helix 95	AK5	N	40	51	Right-handed alpha
Helix 96	AK6	R	12	25	Right-handed alpha
Helix 97	AK7	R	41	45	Right-handed 310
Helix 98	AK8	R	70	75	Right-handed 310

There are 33 sheets in PDB entry 8CEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	63	64	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	84	88	anti-parallel
Strand 3	C	71	78	anti-parallel
Strand 4	C	111	116	anti-parallel
Strand 5	C	127	134	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	146	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	164	166	anti-parallel
Strand 4	C	195	204	parallel
Strand 5	C	178	186	anti-parallel
Strand 6	C	139	146	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	353	364	parallel
Strand 3	C	337	347	anti-parallel
Strand 4	C	281	288	anti-parallel
Strand 5	C	269	275	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	367	370	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	312	first strand
Strand 2	C	317	318	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	427	first strand
Strand 2	C	433	439	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	474	first strand
Strand 2	C	537	539	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	639	first strand
Strand 2	C	642	646	anti-parallel
Strand 3	C	652	656	anti-parallel
Strand 4	C	702	709	parallel
Strand 5	C	688	697	anti-parallel
Strand 6	C	630	639	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	668	first strand
Strand 2	C	673	676	anti-parallel
Strand 3	C	682	684	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	31	35	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	67	70	parallel
Strand 3	D	160	164	parallel
Strand 4	D	183	187	parallel
Strand 5	D	198	201	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	121	first strand
Strand 2	F	138	141	anti-parallel
Strand 3	F	173	176	anti-parallel
Strand 4	F	165	166	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	25	first strand
Strand 2	G	28	40	anti-parallel
Strand 3	G	45	53	anti-parallel
Strand 4	G	72	73	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	89	first strand
Strand 2	G	92	98	anti-parallel
Strand 3	G	123	127	anti-parallel
Strand 4	G	105	106	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	28	first strand
Strand 2	I	59	64	anti-parallel
Strand 3	I	46	52	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	67	first strand
Strand 2	I	71	72	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	125	132	anti-parallel
Strand 3	I	88	89	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	79	first strand
Strand 2	I	125	132	anti-parallel
Strand 3	I	103	107	anti-parallel
Strand 4	I	112	114	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	34	37	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	53	first strand
Strand 2	L	63	70	anti-parallel
Strand 3	L	75	79	anti-parallel
Strand 4	L	108	115	parallel
Strand 5	L	92	97	anti-parallel
Strand 6	L	43	53	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	48	51	first strand
Strand 2	P	35	41	anti-parallel
Strand 3	P	15	24	anti-parallel
Strand 4	P	3	12	anti-parallel
Strand 5	P	65	66	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	13	first strand
Strand 2	Q	60	65	anti-parallel
Strand 3	Q	75	77	anti-parallel
Strand 4	Q	39	49	parallel
Strand 5	Q	22	32	anti-parallel
Strand 6	Q	16	19	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	39	52	first strand
Strand 2	T	55	67	anti-parallel
Strand 3	T	2	10	anti-parallel
Strand 4	T	85	92	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	43	48	first strand
Strand 2	V	32	37	anti-parallel
Strand 3	V	20	27	anti-parallel
Strand 4	V	83	89	parallel
Strand 5	V	108	114	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	51	57	parallel
Strand 3	E	64	69	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	152	first strand
Strand 2	E	165	170	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	189	first strand
Strand 2	E	194	205	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	78	first strand
Strand 2	H	85	90	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	12	first strand
Strand 2	J	15	23	anti-parallel
Strand 3	J	61	68	anti-parallel
Strand 4	J	28	30	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	55	first strand
Strand 2	K	59	77	anti-parallel
Strand 3	K	7	12	anti-parallel
Strand 4	K	96	99	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	55	first strand
Strand 2	K	59	77	anti-parallel
Strand 3	N	56	58	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	31	33	first strand
Strand 2	R	48	52	parallel
Strand 3	R	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CEE