Analysis of interatomic Contacts of Structural Units in PDB entry:
8CEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CEF entry

There are 10 chains in PDB entry 8CEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 A 1 G 26
B
 T 1 A 26
C
 LEU 74ARG 158
D
 PRO 75ARG 158
E
 A 1 G 26
F
 T 1 A 26
G
 LYS 76ARG 155
H
 PRO 75TYR 161
J
 PRO 75LYS 162
K
 LEU 74TYR 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8CEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
96 110Right-handed alpha
Helix 2
AA2
C
126 130Right-handed 310
Helix 3
AA3
C
131 143Right-handed alpha
Helix 4
AA4
C
145 149Right-handed 310
Helix 5
AA5
D
96 110Right-handed alpha
Helix 6
AA6
D
131 143Right-handed alpha
Helix 7
AA7
D
145 149Right-handed 310
Helix 8
AA8
G
96 110Right-handed alpha
Helix 9
AA9
G
131 143Right-handed alpha
Helix 10
AB1
H
96 110Right-handed alpha
Helix 11
AB2
H
131 143Right-handed alpha
Helix 12
AB3
H
145 149Right-handed 310
Helix 13
AB4
J
96 110Right-handed alpha
Helix 14
AB5
J
131 143Right-handed alpha
Helix 15
AB6
J
145 149Right-handed 310
Helix 16
AB7
K
96 110Right-handed alpha
Helix 17
AB8
K
131 143Right-handed alpha
Helix 18
AB9
K
145 149Right-handed 310
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There are 6 sheets in PDB entry 8CEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
93 95anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 90first strand
Strand 2
D
93 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
88 90first strand
Strand 2
G
93 95anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
88 90first strand
Strand 2
H
93 95anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
88 90first strand
Strand 2
J
93 95anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
88 90first strand
Strand 2
K
93 95anti-parallel
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