Analysis of interatomic Contacts of Structural Units in PDB entry:
8CEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CEJ entry

There are 3 chains in PDB entry 8CEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	GLY 453
B	VAL 5	GLY 453
C	VAL 5	TYR 427

There are 85 helices in PDB entry 8CEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	22	Right-handed alpha
Helix 2	AA2	A	25	43	Right-handed alpha
Helix 3	AA3	A	43	56	Right-handed alpha
Helix 4	AA4	A	59	79	Right-handed alpha
Helix 5	AA5	A	91	94	Right-handed 310
Helix 6	AA6	A	115	128	Right-handed alpha
Helix 7	AA7	A	137	139	Right-handed 310
Helix 8	AA8	A	140	158	Right-handed alpha
Helix 9	AA9	A	172	183	Right-handed alpha
Helix 10	AB1	A	191	199	Right-handed alpha
Helix 11	AB2	A	222	235	Right-handed alpha
Helix 12	AB3	A	236	240	Right-handed 310
Helix 13	AB4	A	254	265	Right-handed alpha
Helix 14	AB5	A	272	283	Right-handed alpha
Helix 15	AB6	A	291	294	Right-handed 310
Helix 16	AB7	A	297	306	Right-handed alpha
Helix 17	AB8	A	323	331	Right-handed 310
Helix 18	AB9	A	345	360	Right-handed alpha
Helix 19	AC1	A	372	383	Right-handed alpha
Helix 20	AC2	A	393	399	Right-handed 310
Helix 21	AC3	A	426	429	Right-handed 310
Helix 22	AC4	A	447	453	Right-handed alpha
Helix 23	AC5	B	6	22	Right-handed alpha
Helix 24	AC6	B	25	43	Right-handed alpha
Helix 25	AC7	B	43	56	Right-handed alpha
Helix 26	AC8	B	59	79	Right-handed alpha
Helix 27	AC9	B	115	128	Right-handed alpha
Helix 28	AD1	B	137	139	Right-handed 310
Helix 29	AD2	B	140	158	Right-handed alpha
Helix 30	AD3	B	172	182	Right-handed alpha
Helix 31	AD4	B	191	199	Right-handed alpha
Helix 32	AD5	B	222	236	Right-handed alpha
Helix 33	AD6	B	237	240	Right-handed 310
Helix 34	AD7	B	254	265	Right-handed alpha
Helix 35	AD8	B	272	283	Right-handed alpha
Helix 36	AD9	B	291	294	Right-handed 310
Helix 37	AE1	B	297	306	Right-handed alpha
Helix 38	AE2	B	323	331	Right-handed 310
Helix 39	AE3	B	345	360	Right-handed alpha
Helix 40	AE4	B	372	383	Right-handed alpha
Helix 41	AE5	B	393	399	Right-handed 310
Helix 42	AE6	B	426	429	Right-handed 310
Helix 43	AE7	B	447	453	Right-handed alpha
Helix 44	AE8	C	6	22	Right-handed alpha
Helix 45	AE9	C	25	43	Right-handed alpha
Helix 46	AF1	C	43	56	Right-handed alpha
Helix 47	AF2	C	59	79	Right-handed alpha
Helix 48	AF3	C	115	128	Right-handed alpha
Helix 49	AF4	C	137	139	Right-handed 310
Helix 50	AF5	C	140	158	Right-handed alpha
Helix 51	AF6	C	172	183	Right-handed alpha
Helix 52	AF7	C	191	199	Right-handed alpha
Helix 53	AF8	C	222	236	Right-handed alpha
Helix 54	AF9	C	237	240	Right-handed 310
Helix 55	AG1	C	254	265	Right-handed alpha
Helix 56	AG2	C	272	283	Right-handed alpha
Helix 57	AG3	C	291	294	Right-handed 310
Helix 58	AG4	C	297	306	Right-handed alpha
Helix 59	AG5	C	323	331	Right-handed 310
Helix 60	AG6	C	345	358	Right-handed alpha
Helix 61	AG7	C	372	383	Right-handed alpha
Helix 62	AG8	C	393	399	Right-handed 310
Helix 63	AG9	C	426	429	Right-handed 310
Helix 64	AH1	C	447	453	Right-handed alpha
Helix 65	AH2	D	6	23	Right-handed alpha
Helix 66	AH3	D	25	43	Right-handed alpha
Helix 67	AH4	D	43	56	Right-handed alpha
Helix 68	AH5	D	59	79	Right-handed alpha
Helix 69	AH6	D	115	128	Right-handed alpha
Helix 70	AH7	D	137	139	Right-handed 310
Helix 71	AH8	D	140	158	Right-handed alpha
Helix 72	AH9	D	172	183	Right-handed alpha
Helix 73	AI1	D	191	199	Right-handed alpha
Helix 74	AI2	D	222	235	Right-handed alpha
Helix 75	AI3	D	236	240	Right-handed 310
Helix 76	AI4	D	254	265	Right-handed alpha
Helix 77	AI5	D	272	283	Right-handed alpha
Helix 78	AI6	D	291	294	Right-handed 310
Helix 79	AI7	D	297	306	Right-handed alpha
Helix 80	AI8	D	323	331	Right-handed 310
Helix 81	AI9	D	345	360	Right-handed alpha
Helix 82	AJ1	D	372	383	Right-handed alpha
Helix 83	AJ2	D	393	399	Right-handed 310
Helix 84	AJ3	D	426	429	Right-handed 310
Helix 85	AJ4	D	447	453	Right-handed alpha

There are 19 sheets in PDB entry 8CEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	90	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	431	435	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	131	135	parallel
Strand 3	A	104	108	parallel
Strand 4	A	185	188	parallel
Strand 5	A	205	207	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	217	first strand
Strand 2	A	365	369	parallel
Strand 3	A	387	390	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	337	343	parallel
Strand 3	A	315	319	parallel
Strand 4	A	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	431	435	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	167	first strand
Strand 2	B	131	135	parallel
Strand 3	B	104	108	parallel
Strand 4	B	185	188	parallel
Strand 5	B	205	207	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	217	first strand
Strand 2	B	365	369	parallel
Strand 3	B	387	390	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	337	343	parallel
Strand 3	B	315	319	parallel
Strand 4	B	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	90	first strand
Strand 2	C	95	101	anti-parallel
Strand 3	C	431	435	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	131	135	parallel
Strand 3	C	104	108	parallel
Strand 4	C	185	188	parallel
Strand 5	C	205	207	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	217	first strand
Strand 2	C	365	369	parallel
Strand 3	C	387	390	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	337	343	parallel
Strand 3	C	315	319	parallel
Strand 4	C	267	270	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	95	101	anti-parallel
Strand 3	D	431	437	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	131	135	parallel
Strand 3	D	104	108	parallel
Strand 4	D	185	188	parallel
Strand 5	D	205	207	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	270	first strand
Strand 2	D	315	319	parallel
Strand 3	D	337	343	parallel
Strand 4	D	245	251	parallel
Strand 5	D	213	217	parallel
Strand 6	D	365	369	parallel
Strand 7	D	387	390	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	288	289	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CEJ