Analysis of interatomic Contacts of Structural Units in PDB entry:
8CF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CF1 entry

There are 13 chains in PDB entry 8CF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 919	U 965
A	A 968	G 1206
A	C 1208	G 1401
A	C 1403	C 1403
B	PHE 90	ILE 181
C	GLY 2	ILE 207
E	GLU 13	ASN 70
G	PRO 2	PHE 151
I	ASN 4	SER 128
J	ARG 5	LEU 102
M	ALA 2	ILE 116
N	ALA 2	TRP 101
S	PRO 2	ALA 85

There are 43 helices in PDB entry 8CF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	103	117	Right-handed alpha
Helix 2	AA2	B	139	146	Right-handed alpha
Helix 3	AA3	B	147	151	Right-handed 310
Helix 4	AA4	B	169	180	Right-handed alpha
Helix 5	AA5	C	6	11	Right-handed alpha
Helix 6	AA6	C	25	47	Right-handed alpha
Helix 7	AA7	C	48	50	Right-handed 310
Helix 8	AA8	C	72	78	Right-handed alpha
Helix 9	AA9	C	82	96	Right-handed alpha
Helix 10	AB1	C	108	111	Right-handed 310
Helix 11	AB2	C	112	126	Right-handed alpha
Helix 12	AB3	C	129	144	Right-handed alpha
Helix 13	AB4	C	156	160	Right-handed 310
Helix 14	AB5	E	55	70	Right-handed alpha
Helix 15	AB6	G	20	31	Right-handed alpha
Helix 16	AB7	G	35	53	Right-handed alpha
Helix 17	AB8	G	57	70	Right-handed alpha
Helix 18	AB9	G	92	110	Right-handed alpha
Helix 19	AC1	G	115	128	Right-handed alpha
Helix 20	AC2	G	132	145	Right-handed alpha
Helix 21	AC3	I	35	39	Right-handed alpha
Helix 22	AC4	I	41	56	Right-handed alpha
Helix 23	AC5	I	71	91	Right-handed alpha
Helix 24	AC6	I	94	102	Right-handed alpha
Helix 25	AC7	J	14	31	Right-handed alpha
Helix 26	AC8	J	80	87	Right-handed alpha
Helix 27	AC9	M	14	19	Right-handed alpha
Helix 28	AD1	M	20	22	Right-handed 310
Helix 29	AD2	M	26	38	Right-handed alpha
Helix 30	AD3	M	49	61	Right-handed alpha
Helix 31	AD4	M	65	84	Right-handed alpha
Helix 32	AD5	M	85	94	Right-handed alpha
Helix 33	AD6	M	106	111	Right-handed alpha
Helix 34	AD7	N	3	20	Right-handed alpha
Helix 35	AD8	N	20	33	Right-handed alpha
Helix 36	AD9	N	37	51	Right-handed alpha
Helix 37	AE1	N	52	60	Right-handed 310
Helix 38	AE2	N	81	90	Right-handed alpha
Helix 39	AE3	S	4	8	Right-handed 310
Helix 40	AE4	S	12	26	Right-handed alpha
Helix 41	AE5	S	41	45	Right-handed 310
Helix 42	AE6	S	63	67	Right-handed 310
Helix 43	AE7	S	70	75	Right-handed 310

There are 10 sheets in PDB entry 8CF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	52	58	parallel
Strand 3	C	64	70	anti-parallel
Strand 4	C	99	105	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	171	first strand
Strand 2	C	148	155	anti-parallel
Strand 3	C	194	206	anti-parallel
Strand 4	C	180	191	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	24	first strand
Strand 2	E	29	38	anti-parallel
Strand 3	E	49	53	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	79	first strand
Strand 2	G	84	90	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	12	first strand
Strand 2	I	15	23	anti-parallel
Strand 3	I	61	68	anti-parallel
Strand 4	I	28	30	parallel
Strand 5	I	33	34	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	52	first strand
Strand 2	J	62	77	anti-parallel
Strand 3	J	6	12	anti-parallel
Strand 4	J	96	101	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	52	first strand
Strand 2	J	62	77	anti-parallel
Strand 3	N	97	98	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	4	first strand
Strand 2	M	7	8	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	74	first strand
Strand 2	N	79	80	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CF1