Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CFA entry

There are 7 chains in PDB entry 8CFA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 131	SER 382
B	PRO 127	SER 382
C	GLY 128	SER 382
D	ARG 130	SER 382
E	GLY 128	SER 382
F	LEU 129	PHE 381
G	MET 126	SER 382

There are 77 helices in PDB entry 8CFA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	133	138	Right-handed alpha
Helix 2	AA2	A	195	197	Right-handed 310
Helix 3	AA3	A	199	225	Right-handed alpha
Helix 4	AA4	A	244	248	Right-handed 310
Helix 5	AA5	A	253	265	Right-handed alpha
Helix 6	AA6	A	266	269	Right-handed 310
Helix 7	AA7	A	278	286	Right-handed alpha
Helix 8	AA8	A	328	332	Right-handed alpha
Helix 9	AA9	A	351	356	Right-handed alpha
Helix 10	AB1	A	372	374	Right-handed 310
Helix 11	AB2	B	133	138	Right-handed alpha
Helix 12	AB3	B	194	198	Right-handed alpha
Helix 13	AB4	B	200	225	Right-handed alpha
Helix 14	AB5	B	235	240	Right-handed alpha
Helix 15	AB6	B	244	248	Right-handed 310
Helix 16	AB7	B	253	265	Right-handed alpha
Helix 17	AB8	B	266	269	Right-handed 310
Helix 18	AB9	B	278	287	Right-handed alpha
Helix 19	AC1	B	299	303	Right-handed 310
Helix 20	AC2	B	328	332	Right-handed alpha
Helix 21	AC3	B	353	355	Right-handed 310
Helix 22	AC4	B	372	374	Right-handed 310
Helix 23	AC5	C	134	138	Right-handed 310
Helix 24	AC6	C	193	198	Right-handed 310
Helix 25	AC7	C	199	210	Right-handed alpha
Helix 26	AC8	C	211	225	Right-handed alpha
Helix 27	AC9	C	235	240	Right-handed alpha
Helix 28	AD1	C	244	248	Right-handed 310
Helix 29	AD2	C	253	266	Right-handed alpha
Helix 30	AD3	C	267	269	Right-handed 310
Helix 31	AD4	C	278	287	Right-handed alpha
Helix 32	AD5	C	299	304	Right-handed alpha
Helix 33	AD6	C	328	332	Right-handed alpha
Helix 34	AD7	C	372	374	Right-handed 310
Helix 35	AD8	D	133	138	Right-handed alpha
Helix 36	AD9	D	193	198	Right-handed alpha
Helix 37	AE1	D	201	210	Right-handed alpha
Helix 38	AE2	D	211	225	Right-handed alpha
Helix 39	AE3	D	244	248	Right-handed 310
Helix 40	AE4	D	253	265	Right-handed alpha
Helix 41	AE5	D	266	269	Right-handed 310
Helix 42	AE6	D	278	287	Right-handed alpha
Helix 43	AE7	D	301	306	Right-handed alpha
Helix 44	AE8	D	328	332	Right-handed alpha
Helix 45	AE9	D	351	356	Right-handed alpha
Helix 46	AF1	D	372	374	Right-handed 310
Helix 47	AF2	E	133	138	Right-handed alpha
Helix 48	AF3	E	195	199	Right-handed 310
Helix 49	AF4	E	200	205	Right-handed alpha
Helix 50	AF5	E	206	226	Right-handed alpha
Helix 51	AF6	E	235	240	Right-handed alpha
Helix 52	AF7	E	244	248	Right-handed 310
Helix 53	AF8	E	253	266	Right-handed alpha
Helix 54	AF9	E	267	269	Right-handed 310
Helix 55	AG1	E	278	287	Right-handed alpha
Helix 56	AG2	E	299	303	Right-handed 310
Helix 57	AG3	E	328	332	Right-handed alpha
Helix 58	AG4	E	372	374	Right-handed 310
Helix 59	AG5	F	134	138	Right-handed 310
Helix 60	AG6	F	196	199	Right-handed 310
Helix 61	AG7	F	200	212	Right-handed alpha
Helix 62	AG8	F	215	226	Right-handed alpha
Helix 63	AG9	F	244	248	Right-handed 310
Helix 64	AH1	F	254	266	Right-handed alpha
Helix 65	AH2	F	267	269	Right-handed 310
Helix 66	AH3	F	278	287	Right-handed alpha
Helix 67	AH4	F	299	306	Right-handed alpha
Helix 68	AH5	F	328	332	Right-handed alpha
Helix 69	AH6	G	133	138	Right-handed alpha
Helix 70	AH7	G	194	199	Right-handed alpha
Helix 71	AH8	G	201	210	Right-handed alpha
Helix 72	AH9	G	210	226	Right-handed alpha
Helix 73	AI1	G	235	240	Right-handed alpha
Helix 74	AI2	G	253	267	Right-handed alpha
Helix 75	AI3	G	278	287	Right-handed alpha
Helix 76	AI4	G	329	331	Right-handed 310
Helix 77	AI5	G	372	374	Right-handed 310

There are 25 sheets in PDB entry 8CFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	333	346	parallel
Strand 3	A	357	370	anti-parallel
Strand 4	A	184	193	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	178	180	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	376	380	parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	274	276	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	311	312	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	333	346	parallel
Strand 3	B	357	370	anti-parallel
Strand 4	B	184	193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	174	179	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	311	315	anti-parallel
Strand 3	B	275	277	parallel
Strand 4	B	323	327	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	333	346	parallel
Strand 3	C	359	370	anti-parallel
Strand 4	C	184	190	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	176	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	311	315	anti-parallel
Strand 3	C	273	277	parallel
Strand 4	C	325	327	anti-parallel
Strand 5	C	376	377	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	155	first strand
Strand 2	D	174	182	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	190	first strand
Strand 2	D	360	366	anti-parallel
Strand 3	D	337	345	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	376	380	parallel
Strand 3	D	323	327	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	311	315	parallel
Strand 3	D	307	308	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	369	370	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	154	first strand
Strand 2	E	175	182	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	193	first strand
Strand 2	E	357	370	anti-parallel
Strand 3	E	333	346	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	242	first strand
Strand 2	E	376	380	parallel
Strand 3	E	323	327	anti-parallel
Strand 4	E	274	277	anti-parallel
Strand 5	E	311	315	parallel
Strand 6	E	307	308	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	142	first strand
Strand 2	F	333	346	parallel
Strand 3	F	359	370	anti-parallel
Strand 4	F	184	190	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	155	first strand
Strand 2	F	174	182	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	242	first strand
Strand 2	F	377	380	parallel
Strand 3	F	323	326	anti-parallel
Strand 4	F	275	277	anti-parallel
Strand 5	F	311	315	parallel
Strand 6	F	307	308	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	142	first strand
Strand 2	G	333	346	parallel
Strand 3	G	357	370	anti-parallel
Strand 4	G	184	193	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	155	first strand
Strand 2	G	174	182	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	242	first strand
Strand 2	G	376	380	parallel
Strand 3	G	323	327	anti-parallel
Strand 4	G	274	277	anti-parallel
Strand 5	G	311	315	parallel
Strand 6	G	307	308	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	288	289	first strand
Strand 2	G	295	296	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CFA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFA