Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CFN entry

There are 2 chains in PDB entry 8CFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8TYR 469
C
 ALA 8TYR 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8CFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 19Right-handed 310
Helix 2
AA2
A
20 34Right-handed alpha
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
91 101Right-handed alpha
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
141 151Right-handed alpha
Helix 8
AA8
A
152 158Right-handed 310
Helix 9
AA9
A
165 178Right-handed alpha
Helix 10
AB1
A
191 196Right-handed alpha
Helix 11
AB2
A
200 216Right-handed alpha
Helix 12
AB3
A
230 242Right-handed alpha
Helix 13
AB4
A
253 263Right-handed alpha
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
279 283Right-handed 310
Helix 16
AB7
A
284 289Right-handed alpha
Helix 17
AB8
A
305 312Right-handed alpha
Helix 18
AB9
A
324 328Right-handed 310
Helix 19
AC1
A
329 337Right-handed alpha
Helix 20
AC2
A
370 372Right-handed 310
Helix 21
AC3
A
373 379Right-handed alpha
Helix 22
AC4
A
383 405Right-handed alpha
Helix 23
AC5
A
406 409Right-handed 310
Helix 24
AC6
A
410 416Right-handed alpha
Helix 25
AC7
A
424 439Right-handed alpha
Helix 26
AC8
A
447 455Right-handed alpha
Helix 27
AC9
C
17 19Right-handed 310
Helix 28
AD1
C
20 34Right-handed alpha
Helix 29
AD2
C
35 46Right-handed alpha
Helix 30
AD3
C
63 76Right-handed alpha
Helix 31
AD4
C
91 101Right-handed alpha
Helix 32
AD5
C
112 124Right-handed alpha
Helix 33
AD6
C
141 151Right-handed alpha
Helix 34
AD7
C
151 156Right-handed alpha
Helix 35
AD8
C
165 178Right-handed alpha
Helix 36
AD9
C
191 196Right-handed alpha
Helix 37
AE1
C
200 216Right-handed alpha
Helix 38
AE2
C
230 242Right-handed alpha
Helix 39
AE3
C
253 263Right-handed alpha
Helix 40
AE4
C
271 275Right-handed 310
Helix 41
AE5
C
279 283Right-handed 310
Helix 42
AE6
C
284 289Right-handed alpha
Helix 43
AE7
C
305 312Right-handed alpha
Helix 44
AE8
C
324 328Right-handed 310
Helix 45
AE9
C
329 337Right-handed alpha
Helix 46
AF1
C
370 372Right-handed 310
Helix 47
AF2
C
373 379Right-handed alpha
Helix 48
AF3
C
383 405Right-handed alpha
Helix 49
AF4
C
406 409Right-handed 310
Helix 50
AF5
C
410 418Right-handed alpha
Helix 51
AF6
C
424 439Right-handed alpha
Helix 52
AF7
C
447 455Right-handed alpha
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There are 6 sheets in PDB entry 8CFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
79 83parallel
Strand 3
A
55 59parallel
Strand 4
A
135 138parallel
Strand 5
A
161 163parallel
Strand 6
A
185 187parallel
Strand 7
A
420 421parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
129 130anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
246 250parallel
Strand 3
A
223 227parallel
Strand 4
A
293 296parallel
Strand 5
A
317 320parallel
Strand 6
A
364 368parallel
Strand 7
A
346 350anti-parallel
Strand 8
A
338 343anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
79 83parallel
Strand 3
C
55 59parallel
Strand 4
C
135 138parallel
Strand 5
C
161 163parallel
Strand 6
C
185 187parallel
Strand 7
C
420 421parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 126first strand
Strand 2
C
129 130anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
246 250parallel
Strand 3
C
223 227parallel
Strand 4
C
293 296parallel
Strand 5
C
317 320parallel
Strand 6
C
364 368parallel
Strand 7
C
346 350anti-parallel
Strand 8
C
338 343anti-parallel
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