Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CFS entry

There are 3 chains in PDB entry 8CFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	TYR 469
B	GLY 9	TYR 469
C	PHE 10	ALA 369

There are104 helices in PDB entry 8CFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	19	Right-handed 310
Helix 2	AA2	A	20	35	Right-handed alpha
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	63	76	Right-handed alpha
Helix 5	AA5	A	91	101	Right-handed alpha
Helix 6	AA6	A	112	124	Right-handed alpha
Helix 7	AA7	A	141	151	Right-handed alpha
Helix 8	AA8	A	152	158	Right-handed 310
Helix 9	AA9	A	165	178	Right-handed alpha
Helix 10	AB1	A	191	196	Right-handed alpha
Helix 11	AB2	A	197	216	Right-handed alpha
Helix 12	AB3	A	230	242	Right-handed alpha
Helix 13	AB4	A	253	263	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed 310
Helix 15	AB6	A	279	283	Right-handed 310
Helix 16	AB7	A	284	289	Right-handed alpha
Helix 17	AB8	A	305	312	Right-handed alpha
Helix 18	AB9	A	324	328	Right-handed 310
Helix 19	AC1	A	329	337	Right-handed alpha
Helix 20	AC2	A	370	372	Right-handed 310
Helix 21	AC3	A	373	379	Right-handed alpha
Helix 22	AC4	A	383	405	Right-handed alpha
Helix 23	AC5	A	406	409	Right-handed 310
Helix 24	AC6	A	410	418	Right-handed alpha
Helix 25	AC7	A	424	439	Right-handed alpha
Helix 26	AC8	A	447	455	Right-handed alpha
Helix 27	AC9	B	17	19	Right-handed 310
Helix 28	AD1	B	20	34	Right-handed alpha
Helix 29	AD2	B	35	46	Right-handed alpha
Helix 30	AD3	B	63	76	Right-handed alpha
Helix 31	AD4	B	91	101	Right-handed alpha
Helix 32	AD5	B	112	124	Right-handed alpha
Helix 33	AD6	B	141	151	Right-handed alpha
Helix 34	AD7	B	151	156	Right-handed alpha
Helix 35	AD8	B	165	178	Right-handed alpha
Helix 36	AD9	B	191	196	Right-handed alpha
Helix 37	AE1	B	197	216	Right-handed alpha
Helix 38	AE2	B	230	242	Right-handed alpha
Helix 39	AE3	B	253	263	Right-handed alpha
Helix 40	AE4	B	271	275	Right-handed 310
Helix 41	AE5	B	279	283	Right-handed 310
Helix 42	AE6	B	284	289	Right-handed alpha
Helix 43	AE7	B	305	312	Right-handed alpha
Helix 44	AE8	B	324	328	Right-handed 310
Helix 45	AE9	B	329	337	Right-handed alpha
Helix 46	AF1	B	370	372	Right-handed 310
Helix 47	AF2	B	373	379	Right-handed alpha
Helix 48	AF3	B	383	405	Right-handed alpha
Helix 49	AF4	B	406	409	Right-handed 310
Helix 50	AF5	B	410	418	Right-handed alpha
Helix 51	AF6	B	424	439	Right-handed alpha
Helix 52	AF7	B	447	455	Right-handed alpha
Helix 53	AF8	C	17	19	Right-handed 310
Helix 54	AF9	C	20	34	Right-handed alpha
Helix 55	AG1	C	35	46	Right-handed alpha
Helix 56	AG2	C	63	76	Right-handed alpha
Helix 57	AG3	C	91	101	Right-handed alpha
Helix 58	AG4	C	112	124	Right-handed alpha
Helix 59	AG5	C	141	151	Right-handed alpha
Helix 60	AG6	C	152	158	Right-handed 310
Helix 61	AG7	C	165	178	Right-handed alpha
Helix 62	AG8	C	191	196	Right-handed alpha
Helix 63	AG9	C	197	216	Right-handed alpha
Helix 64	AH1	C	230	242	Right-handed alpha
Helix 65	AH2	C	253	263	Right-handed alpha
Helix 66	AH3	C	271	275	Right-handed 310
Helix 67	AH4	C	279	283	Right-handed 310
Helix 68	AH5	C	284	289	Right-handed alpha
Helix 69	AH6	C	305	312	Right-handed alpha
Helix 70	AH7	C	324	328	Right-handed 310
Helix 71	AH8	C	329	337	Right-handed alpha
Helix 72	AH9	C	370	372	Right-handed 310
Helix 73	AI1	C	373	379	Right-handed alpha
Helix 74	AI2	C	383	405	Right-handed alpha
Helix 75	AI3	C	406	409	Right-handed 310
Helix 76	AI4	C	410	418	Right-handed alpha
Helix 77	AI5	C	424	439	Right-handed alpha
Helix 78	AI6	C	447	455	Right-handed alpha
Helix 79	AI7	D	17	19	Right-handed 310
Helix 80	AI8	D	20	34	Right-handed alpha
Helix 81	AI9	D	35	46	Right-handed alpha
Helix 82	AJ1	D	63	76	Right-handed alpha
Helix 83	AJ2	D	91	101	Right-handed alpha
Helix 84	AJ3	D	112	124	Right-handed alpha
Helix 85	AJ4	D	141	151	Right-handed alpha
Helix 86	AJ5	D	151	156	Right-handed alpha
Helix 87	AJ6	D	165	178	Right-handed alpha
Helix 88	AJ7	D	191	196	Right-handed alpha
Helix 89	AJ8	D	197	216	Right-handed alpha
Helix 90	AJ9	D	230	242	Right-handed alpha
Helix 91	AK1	D	253	263	Right-handed alpha
Helix 92	AK2	D	271	275	Right-handed 310
Helix 93	AK3	D	279	283	Right-handed 310
Helix 94	AK4	D	284	289	Right-handed alpha
Helix 95	AK5	D	305	312	Right-handed alpha
Helix 96	AK6	D	324	328	Right-handed 310
Helix 97	AK7	D	329	337	Right-handed alpha
Helix 98	AK8	D	370	372	Right-handed 310
Helix 99	AK9	D	373	379	Right-handed alpha
Helix 100	AL1	D	383	405	Right-handed alpha
Helix 101	AL2	D	406	409	Right-handed 310
Helix 102	AL3	D	410	418	Right-handed alpha
Helix 103	AL4	D	424	439	Right-handed alpha
Helix 104	AL5	D	447	455	Right-handed alpha

There are 12 sheets in PDB entry 8CFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	79	83	parallel
Strand 3	A	55	59	parallel
Strand 4	A	135	138	parallel
Strand 5	A	161	163	parallel
Strand 6	A	185	187	parallel
Strand 7	A	420	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	129	130	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	246	250	parallel
Strand 3	A	223	227	parallel
Strand 4	A	293	296	parallel
Strand 5	A	317	320	parallel
Strand 6	A	364	368	parallel
Strand 7	A	346	350	anti-parallel
Strand 8	A	338	343	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	79	83	parallel
Strand 3	B	55	59	parallel
Strand 4	B	135	138	parallel
Strand 5	B	161	163	parallel
Strand 6	B	185	187	parallel
Strand 7	B	420	421	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	130	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	246	250	parallel
Strand 3	B	223	227	parallel
Strand 4	B	293	296	parallel
Strand 5	B	317	320	parallel
Strand 6	B	364	368	parallel
Strand 7	B	346	350	anti-parallel
Strand 8	B	338	343	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	79	83	parallel
Strand 3	C	55	59	parallel
Strand 4	C	135	138	parallel
Strand 5	C	161	163	parallel
Strand 6	C	185	187	parallel
Strand 7	C	420	421	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	129	130	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	246	250	parallel
Strand 3	C	223	227	parallel
Strand 4	C	293	296	parallel
Strand 5	C	317	320	parallel
Strand 6	C	364	368	parallel
Strand 7	C	346	350	anti-parallel
Strand 8	C	338	343	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	105	107	parallel
Strand 3	D	79	83	parallel
Strand 4	D	55	59	parallel
Strand 5	D	135	138	parallel
Strand 6	D	161	163	parallel
Strand 7	D	185	187	parallel
Strand 8	D	420	421	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	129	130	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	246	250	parallel
Strand 3	D	223	227	parallel
Strand 4	D	293	296	parallel
Strand 5	D	317	320	parallel
Strand 6	D	364	368	parallel
Strand 7	D	346	350	anti-parallel
Strand 8	D	338	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFS