Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CFX entry

There are 3 chains in PDB entry 8CFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	TYR 469
B	GLY 9	TYR 469
C	ALA 8	ASN 375

There are209 helices in PDB entry 8CFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	19	Right-handed 310
Helix 2	AA2	A	20	34	Right-handed alpha
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	63	76	Right-handed alpha
Helix 5	AA5	A	91	101	Right-handed alpha
Helix 6	AA6	A	112	124	Right-handed alpha
Helix 7	AA7	A	141	151	Right-handed alpha
Helix 8	AA8	A	151	156	Right-handed alpha
Helix 9	AA9	A	165	178	Right-handed alpha
Helix 10	AB1	A	191	196	Right-handed alpha
Helix 11	AB2	A	197	216	Right-handed alpha
Helix 12	AB3	A	230	242	Right-handed alpha
Helix 13	AB4	A	253	263	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed 310
Helix 15	AB6	A	279	283	Right-handed 310
Helix 16	AB7	A	284	289	Right-handed alpha
Helix 17	AB8	A	305	312	Right-handed alpha
Helix 18	AB9	A	324	328	Right-handed 310
Helix 19	AC1	A	329	337	Right-handed alpha
Helix 20	AC2	A	370	372	Right-handed 310
Helix 21	AC3	A	373	379	Right-handed alpha
Helix 22	AC4	A	383	405	Right-handed alpha
Helix 23	AC5	A	406	409	Right-handed 310
Helix 24	AC6	A	410	418	Right-handed alpha
Helix 25	AC7	A	424	439	Right-handed alpha
Helix 26	AC8	A	447	455	Right-handed alpha
Helix 27	AC9	B	17	19	Right-handed 310
Helix 28	AD1	B	20	34	Right-handed alpha
Helix 29	AD2	B	35	46	Right-handed alpha
Helix 30	AD3	B	63	76	Right-handed alpha
Helix 31	AD4	B	91	101	Right-handed alpha
Helix 32	AD5	B	112	124	Right-handed alpha
Helix 33	AD6	B	141	151	Right-handed alpha
Helix 34	AD7	B	153	158	Right-handed 310
Helix 35	AD8	B	165	178	Right-handed alpha
Helix 36	AD9	B	191	196	Right-handed alpha
Helix 37	AE1	B	197	216	Right-handed alpha
Helix 38	AE2	B	230	242	Right-handed alpha
Helix 39	AE3	B	253	263	Right-handed alpha
Helix 40	AE4	B	271	275	Right-handed 310
Helix 41	AE5	B	279	283	Right-handed 310
Helix 42	AE6	B	284	289	Right-handed alpha
Helix 43	AE7	B	305	312	Right-handed alpha
Helix 44	AE8	B	324	328	Right-handed 310
Helix 45	AE9	B	329	337	Right-handed alpha
Helix 46	AF1	B	370	372	Right-handed 310
Helix 47	AF2	B	373	379	Right-handed alpha
Helix 48	AF3	B	383	405	Right-handed alpha
Helix 49	AF4	B	406	409	Right-handed 310
Helix 50	AF5	B	410	418	Right-handed 310
Helix 51	AF6	B	424	439	Right-handed alpha
Helix 52	AF7	B	447	455	Right-handed alpha
Helix 53	AF8	C	17	19	Right-handed 310
Helix 54	AF9	C	20	34	Right-handed alpha
Helix 55	AG1	C	35	47	Right-handed alpha
Helix 56	AG2	C	63	76	Right-handed alpha
Helix 57	AG3	C	91	101	Right-handed alpha
Helix 58	AG4	C	112	124	Right-handed alpha
Helix 59	AG5	C	141	151	Right-handed alpha
Helix 60	AG6	C	153	158	Right-handed 310
Helix 61	AG7	C	165	179	Right-handed alpha
Helix 62	AG8	C	191	196	Right-handed alpha
Helix 63	AG9	C	197	216	Right-handed alpha
Helix 64	AH1	C	230	242	Right-handed alpha
Helix 65	AH2	C	253	263	Right-handed alpha
Helix 66	AH3	C	271	275	Right-handed 310
Helix 67	AH4	C	279	283	Right-handed 310
Helix 68	AH5	C	284	289	Right-handed alpha
Helix 69	AH6	C	305	312	Right-handed alpha
Helix 70	AH7	C	324	328	Right-handed 310
Helix 71	AH8	C	329	337	Right-handed alpha
Helix 72	AH9	C	370	372	Right-handed 310
Helix 73	AI1	C	373	379	Right-handed alpha
Helix 74	AI2	C	383	405	Right-handed alpha
Helix 75	AI3	C	406	409	Right-handed 310
Helix 76	AI4	C	410	418	Right-handed alpha
Helix 77	AI5	C	424	439	Right-handed alpha
Helix 78	AI6	C	447	454	Right-handed alpha
Helix 79	AI7	D	17	19	Right-handed 310
Helix 80	AI8	D	20	34	Right-handed alpha
Helix 81	AI9	D	35	46	Right-handed alpha
Helix 82	AJ1	D	63	76	Right-handed alpha
Helix 83	AJ2	D	91	101	Right-handed alpha
Helix 84	AJ3	D	112	124	Right-handed alpha
Helix 85	AJ4	D	141	151	Right-handed alpha
Helix 86	AJ5	D	152	158	Right-handed 310
Helix 87	AJ6	D	165	178	Right-handed alpha
Helix 88	AJ7	D	191	196	Right-handed alpha
Helix 89	AJ8	D	197	216	Right-handed alpha
Helix 90	AJ9	D	230	242	Right-handed alpha
Helix 91	AK1	D	253	263	Right-handed alpha
Helix 92	AK2	D	271	275	Right-handed 310
Helix 93	AK3	D	279	283	Right-handed 310
Helix 94	AK4	D	284	289	Right-handed alpha
Helix 95	AK5	D	305	312	Right-handed alpha
Helix 96	AK6	D	324	328	Right-handed 310
Helix 97	AK7	D	329	337	Right-handed alpha
Helix 98	AK8	D	370	372	Right-handed 310
Helix 99	AK9	D	373	379	Right-handed alpha
Helix 100	AL1	D	383	405	Right-handed alpha
Helix 101	AL2	D	406	409	Right-handed 310
Helix 102	AL3	D	410	418	Right-handed alpha
Helix 103	AL4	D	424	439	Right-handed alpha
Helix 104	AL5	D	447	455	Right-handed alpha
Helix 105	AL6	G	17	19	Right-handed 310
Helix 106	AL7	G	20	34	Right-handed alpha
Helix 107	AL8	G	35	46	Right-handed alpha
Helix 108	AL9	G	63	76	Right-handed alpha
Helix 109	AM1	G	91	101	Right-handed alpha
Helix 110	AM2	G	112	124	Right-handed alpha
Helix 111	AM3	G	141	151	Right-handed alpha
Helix 112	AM4	G	151	156	Right-handed alpha
Helix 113	AM5	G	165	178	Right-handed alpha
Helix 114	AM6	G	191	196	Right-handed alpha
Helix 115	AM7	G	197	216	Right-handed alpha
Helix 116	AM8	G	230	242	Right-handed alpha
Helix 117	AM9	G	253	263	Right-handed alpha
Helix 118	AN1	G	271	275	Right-handed 310
Helix 119	AN2	G	279	283	Right-handed 310
Helix 120	AN3	G	284	289	Right-handed alpha
Helix 121	AN4	G	305	312	Right-handed alpha
Helix 122	AN5	G	324	328	Right-handed 310
Helix 123	AN6	G	329	337	Right-handed alpha
Helix 124	AN7	G	370	372	Right-handed 310
Helix 125	AN8	G	373	379	Right-handed alpha
Helix 126	AN9	G	383	405	Right-handed alpha
Helix 127	AO1	G	406	409	Right-handed 310
Helix 128	AO2	G	410	418	Right-handed alpha
Helix 129	AO3	G	424	439	Right-handed alpha
Helix 130	AO4	G	447	455	Right-handed alpha
Helix 131	AO5	H	17	19	Right-handed 310
Helix 132	AO6	H	20	34	Right-handed alpha
Helix 133	AO7	H	35	46	Right-handed alpha
Helix 134	AO8	H	63	76	Right-handed alpha
Helix 135	AO9	H	91	101	Right-handed alpha
Helix 136	AP1	H	112	124	Right-handed alpha
Helix 137	AP2	H	141	151	Right-handed alpha
Helix 138	AP3	H	153	158	Right-handed 310
Helix 139	AP4	H	165	178	Right-handed alpha
Helix 140	AP5	H	191	196	Right-handed alpha
Helix 141	AP6	H	200	216	Right-handed alpha
Helix 142	AP7	H	230	242	Right-handed alpha
Helix 143	AP8	H	253	263	Right-handed alpha
Helix 144	AP9	H	271	275	Right-handed 310
Helix 145	AQ1	H	279	283	Right-handed 310
Helix 146	AQ2	H	284	289	Right-handed alpha
Helix 147	AQ3	H	305	312	Right-handed alpha
Helix 148	AQ4	H	324	328	Right-handed 310
Helix 149	AQ5	H	329	337	Right-handed alpha
Helix 150	AQ6	H	370	372	Right-handed 310
Helix 151	AQ7	H	373	379	Right-handed alpha
Helix 152	AQ8	H	383	405	Right-handed alpha
Helix 153	AQ9	H	406	409	Right-handed 310
Helix 154	AR1	H	410	418	Right-handed alpha
Helix 155	AR2	H	424	439	Right-handed alpha
Helix 156	AR3	H	447	455	Right-handed alpha
Helix 157	AR4	I	17	19	Right-handed 310
Helix 158	AR5	I	20	34	Right-handed alpha
Helix 159	AR6	I	35	46	Right-handed alpha
Helix 160	AR7	I	63	76	Right-handed alpha
Helix 161	AR8	I	91	101	Right-handed alpha
Helix 162	AR9	I	112	124	Right-handed alpha
Helix 163	AS1	I	141	151	Right-handed alpha
Helix 164	AS2	I	152	158	Right-handed 310
Helix 165	AS3	I	165	178	Right-handed alpha
Helix 166	AS4	I	191	196	Right-handed alpha
Helix 167	AS5	I	197	216	Right-handed alpha
Helix 168	AS6	I	230	242	Right-handed alpha
Helix 169	AS7	I	253	263	Right-handed alpha
Helix 170	AS8	I	271	275	Right-handed 310
Helix 171	AS9	I	279	283	Right-handed 310
Helix 172	AT1	I	284	289	Right-handed alpha
Helix 173	AT2	I	305	312	Right-handed alpha
Helix 174	AT3	I	324	328	Right-handed 310
Helix 175	AT4	I	329	337	Right-handed alpha
Helix 176	AT5	I	370	372	Right-handed 310
Helix 177	AT6	I	373	379	Right-handed alpha
Helix 178	AT7	I	383	405	Right-handed alpha
Helix 179	AT8	I	406	409	Right-handed 310
Helix 180	AT9	I	410	418	Right-handed alpha
Helix 181	AU1	I	424	439	Right-handed alpha
Helix 182	AU2	I	447	455	Right-handed alpha
Helix 183	AU3	J	17	19	Right-handed 310
Helix 184	AU4	J	20	34	Right-handed alpha
Helix 185	AU5	J	35	46	Right-handed alpha
Helix 186	AU6	J	63	76	Right-handed alpha
Helix 187	AU7	J	91	101	Right-handed alpha
Helix 188	AU8	J	112	124	Right-handed alpha
Helix 189	AU9	J	141	151	Right-handed alpha
Helix 190	AV1	J	152	158	Right-handed 310
Helix 191	AV2	J	165	178	Right-handed alpha
Helix 192	AV3	J	191	196	Right-handed alpha
Helix 193	AV4	J	197	216	Right-handed alpha
Helix 194	AV5	J	230	242	Right-handed alpha
Helix 195	AV6	J	253	263	Right-handed alpha
Helix 196	AV7	J	271	275	Right-handed 310
Helix 197	AV8	J	279	283	Right-handed 310
Helix 198	AV9	J	284	289	Right-handed alpha
Helix 199	AW1	J	305	312	Right-handed alpha
Helix 200	AW2	J	324	328	Right-handed 310
Helix 201	AW3	J	329	337	Right-handed alpha
Helix 202	AW4	J	370	372	Right-handed 310
Helix 203	AW5	J	373	379	Right-handed alpha
Helix 204	AW6	J	383	405	Right-handed alpha
Helix 205	AW7	J	406	409	Right-handed 310
Helix 206	AW8	J	410	415	Right-handed alpha
Helix 207	AW9	J	416	418	Right-handed 310
Helix 208	AX1	J	424	439	Right-handed alpha
Helix 209	AX2	J	447	455	Right-handed alpha

There are 24 sheets in PDB entry 8CFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	79	83	parallel
Strand 3	A	55	59	parallel
Strand 4	A	135	138	parallel
Strand 5	A	161	163	parallel
Strand 6	A	185	187	parallel
Strand 7	A	420	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	129	130	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	246	250	parallel
Strand 3	A	223	227	parallel
Strand 4	A	293	296	parallel
Strand 5	A	317	320	parallel
Strand 6	A	364	368	parallel
Strand 7	A	346	350	anti-parallel
Strand 8	A	338	343	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	79	83	parallel
Strand 3	B	55	59	parallel
Strand 4	B	135	138	parallel
Strand 5	B	161	163	parallel
Strand 6	B	185	187	parallel
Strand 7	B	420	421	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	130	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	246	250	parallel
Strand 3	B	223	227	parallel
Strand 4	B	293	296	parallel
Strand 5	B	317	320	parallel
Strand 6	B	364	368	parallel
Strand 7	B	346	350	anti-parallel
Strand 8	B	338	343	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	79	83	parallel
Strand 3	C	55	59	parallel
Strand 4	C	135	138	parallel
Strand 5	C	161	163	parallel
Strand 6	C	185	187	parallel
Strand 7	C	420	421	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	129	130	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	246	250	parallel
Strand 3	C	223	227	parallel
Strand 4	C	293	296	parallel
Strand 5	C	317	320	parallel
Strand 6	C	364	368	parallel
Strand 7	C	346	350	anti-parallel
Strand 8	C	338	343	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	79	83	parallel
Strand 3	D	55	59	parallel
Strand 4	D	135	138	parallel
Strand 5	D	161	163	parallel
Strand 6	D	185	187	parallel
Strand 7	D	420	421	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	129	130	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	246	250	parallel
Strand 3	D	223	227	parallel
Strand 4	D	293	296	parallel
Strand 5	D	317	320	parallel
Strand 6	D	364	368	parallel
Strand 7	D	346	350	anti-parallel
Strand 8	D	338	343	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	106	first strand
Strand 2	G	79	83	parallel
Strand 3	G	55	59	parallel
Strand 4	G	135	138	parallel
Strand 5	G	161	163	parallel
Strand 6	G	185	187	parallel
Strand 7	G	420	421	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	126	first strand
Strand 2	G	129	130	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	266	267	first strand
Strand 2	G	246	250	parallel
Strand 3	G	223	227	parallel
Strand 4	G	293	296	parallel
Strand 5	G	317	320	parallel
Strand 6	G	364	368	parallel
Strand 7	G	346	350	anti-parallel
Strand 8	G	338	343	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	106	first strand
Strand 2	H	79	83	parallel
Strand 3	H	55	59	parallel
Strand 4	H	135	138	parallel
Strand 5	H	161	163	parallel
Strand 6	H	185	187	parallel
Strand 7	H	420	421	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	126	first strand
Strand 2	H	129	130	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	246	250	parallel
Strand 3	H	223	227	parallel
Strand 4	H	293	296	parallel
Strand 5	H	317	320	parallel
Strand 6	H	364	368	parallel
Strand 7	H	346	350	anti-parallel
Strand 8	H	338	343	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	105	106	first strand
Strand 2	I	79	83	parallel
Strand 3	I	55	59	parallel
Strand 4	I	135	138	parallel
Strand 5	I	161	163	parallel
Strand 6	I	185	187	parallel
Strand 7	I	420	421	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	126	first strand
Strand 2	I	129	130	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	266	267	first strand
Strand 2	I	246	250	parallel
Strand 3	I	223	227	parallel
Strand 4	I	293	296	parallel
Strand 5	I	317	320	parallel
Strand 6	I	364	368	parallel
Strand 7	I	346	350	anti-parallel
Strand 8	I	338	343	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	15	first strand
Strand 2	J	105	107	parallel
Strand 3	J	79	83	parallel
Strand 4	J	55	59	parallel
Strand 5	J	135	138	parallel
Strand 6	J	161	163	parallel
Strand 7	J	185	187	parallel
Strand 8	J	420	421	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	126	first strand
Strand 2	J	129	130	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	266	267	first strand
Strand 2	J	246	250	parallel
Strand 3	J	223	227	parallel
Strand 4	J	293	296	parallel
Strand 5	J	317	320	parallel
Strand 6	J	364	368	parallel
Strand 7	J	346	350	anti-parallel
Strand 8	J	338	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CFX