Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CG4 entry

There are 2 chains in PDB entry 8CG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	PRO 1254
B	GLN 3	PRO 1254

There are112 helices in PDB entry 8CG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	30	51	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	64	74	Right-handed alpha
Helix 5	AA5	A	79	101	Right-handed alpha
Helix 6	AA6	A	107	109	Right-handed 310
Helix 7	AA7	A	119	128	Right-handed alpha
Helix 8	AA8	A	131	161	Right-handed alpha
Helix 9	AA9	A	162	165	Right-handed 310
Helix 10	AB1	A	179	195	Right-handed alpha
Helix 11	AB2	A	197	201	Right-handed 310
Helix 12	AB3	A	217	226	Right-handed alpha
Helix 13	AB4	A	251	259	Right-handed alpha
Helix 14	AB5	A	266	270	Right-handed 310
Helix 15	AB6	A	289	304	Right-handed alpha
Helix 16	AB7	A	307	324	Right-handed alpha
Helix 17	AB8	A	344	349	Right-handed alpha
Helix 18	AB9	A	388	399	Right-handed alpha
Helix 19	AC1	A	412	417	Right-handed alpha
Helix 20	AC2	A	443	447	Right-handed 310
Helix 21	AC3	A	452	456	Right-handed 310
Helix 22	AC4	A	457	474	Right-handed alpha
Helix 23	AC5	A	481	487	Right-handed 310
Helix 24	AC6	A	520	531	Right-handed alpha
Helix 25	AC7	A	541	543	Right-handed 310
Helix 26	AC8	A	544	560	Right-handed alpha
Helix 27	AC9	A	575	577	Right-handed 310
Helix 28	AD1	A	578	583	Right-handed alpha
Helix 29	AD2	A	618	624	Right-handed alpha
Helix 30	AD3	A	650	666	Right-handed alpha
Helix 31	AD4	A	668	670	Right-handed 310
Helix 32	AD5	A	684	698	Right-handed alpha
Helix 33	AD6	A	714	718	Right-handed 310
Helix 34	AD7	A	725	741	Right-handed alpha
Helix 35	AD8	A	762	765	Right-handed 310
Helix 36	AD9	A	827	845	Right-handed alpha
Helix 37	AE1	A	849	859	Right-handed alpha
Helix 38	AE2	A	874	889	Right-handed alpha
Helix 39	AE3	A	890	893	Right-handed 310
Helix 40	AE4	A	916	923	Right-handed alpha
Helix 41	AE5	A	923	940	Right-handed alpha
Helix 42	AE6	A	945	951	Right-handed alpha
Helix 43	AE7	A	960	982	Right-handed alpha
Helix 44	AE8	A	995	1003	Right-handed alpha
Helix 45	AE9	A	1007	1026	Right-handed alpha
Helix 46	AF1	A	1039	1042	Right-handed 310
Helix 47	AF2	A	1043	1050	Right-handed alpha
Helix 48	AF3	A	1069	1082	Right-handed alpha
Helix 49	AF4	A	1097	1101	Right-handed 310
Helix 50	AF5	A	1102	1111	Right-handed alpha
Helix 51	AF6	A	1112	1114	Right-handed 310
Helix 52	AF7	A	1139	1147	Right-handed alpha
Helix 53	AF8	A	1152	1163	Right-handed alpha
Helix 54	AF9	A	1180	1189	Right-handed alpha
Helix 55	AG1	A	1204	1220	Right-handed alpha
Helix 56	AG2	A	1224	1230	Right-handed alpha
Helix 57	AG3	A	1232	1236	Right-handed 310
Helix 58	AG4	B	17	25	Right-handed alpha
Helix 59	AG5	B	30	51	Right-handed alpha
Helix 60	AG6	B	53	61	Right-handed alpha
Helix 61	AG7	B	64	74	Right-handed alpha
Helix 62	AG8	B	78	101	Right-handed alpha
Helix 63	AG9	B	107	109	Right-handed 310
Helix 64	AH1	B	119	128	Right-handed alpha
Helix 65	AH2	B	131	161	Right-handed alpha
Helix 66	AH3	B	162	165	Right-handed 310
Helix 67	AH4	B	179	195	Right-handed alpha
Helix 68	AH5	B	197	201	Right-handed 310
Helix 69	AH6	B	217	226	Right-handed alpha
Helix 70	AH7	B	251	259	Right-handed alpha
Helix 71	AH8	B	266	270	Right-handed 310
Helix 72	AH9	B	289	304	Right-handed alpha
Helix 73	AI1	B	307	324	Right-handed alpha
Helix 74	AI2	B	342	349	Right-handed alpha
Helix 75	AI3	B	388	399	Right-handed alpha
Helix 76	AI4	B	412	417	Right-handed 310
Helix 77	AI5	B	443	447	Right-handed 310
Helix 78	AI6	B	452	456	Right-handed 310
Helix 79	AI7	B	457	474	Right-handed alpha
Helix 80	AI8	B	481	487	Right-handed 310
Helix 81	AI9	B	520	531	Right-handed alpha
Helix 82	AJ1	B	541	543	Right-handed 310
Helix 83	AJ2	B	544	560	Right-handed alpha
Helix 84	AJ3	B	576	583	Right-handed alpha
Helix 85	AJ4	B	618	624	Right-handed alpha
Helix 86	AJ5	B	650	666	Right-handed alpha
Helix 87	AJ6	B	668	670	Right-handed 310
Helix 88	AJ7	B	684	698	Right-handed alpha
Helix 89	AJ8	B	714	718	Right-handed 310
Helix 90	AJ9	B	725	741	Right-handed alpha
Helix 91	AK1	B	762	765	Right-handed 310
Helix 92	AK2	B	827	845	Right-handed alpha
Helix 93	AK3	B	849	859	Right-handed alpha
Helix 94	AK4	B	874	889	Right-handed alpha
Helix 95	AK5	B	916	923	Right-handed alpha
Helix 96	AK6	B	923	940	Right-handed alpha
Helix 97	AK7	B	945	951	Right-handed alpha
Helix 98	AK8	B	960	982	Right-handed alpha
Helix 99	AK9	B	995	1003	Right-handed alpha
Helix 100	AL1	B	1007	1026	Right-handed alpha
Helix 101	AL2	B	1039	1042	Right-handed 310
Helix 102	AL3	B	1043	1051	Right-handed alpha
Helix 103	AL4	B	1069	1081	Right-handed alpha
Helix 104	AL5	B	1097	1101	Right-handed 310
Helix 105	AL6	B	1103	1111	Right-handed alpha
Helix 106	AL7	B	1112	1114	Right-handed 310
Helix 107	AL8	B	1139	1147	Right-handed alpha
Helix 108	AL9	B	1152	1163	Right-handed alpha
Helix 109	AM1	B	1180	1189	Right-handed alpha
Helix 110	AM2	B	1204	1220	Right-handed alpha
Helix 111	AM3	B	1224	1229	Right-handed alpha
Helix 112	AM4	B	1232	1236	Right-handed 310

There are 16 sheets in PDB entry 8CG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	111	115	parallel
Strand 3	A	5	10	parallel
Strand 4	A	332	335	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	207	first strand
Strand 2	A	211	215	anti-parallel
Strand 3	A	172	176	anti-parallel
Strand 4	A	235	238	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	489	494	parallel
Strand 3	A	564	571	parallel
Strand 4	A	609	617	anti-parallel
Strand 5	A	374	382	anti-parallel
Strand 6	A	630	639	anti-parallel
Strand 7	A	795	802	anti-parallel
Strand 8	A	784	790	anti-parallel
Strand 9	A	672	676	parallel
Strand 10	A	710	713	parallel
Strand 11	A	767	768	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	1249	1250	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	A	774	775	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	825	first strand
Strand 2	A	866	872	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1130	1132	first strand
Strand 2	A	1122	1125	anti-parallel
Strand 3	A	988	991	parallel
Strand 4	A	901	905	parallel
Strand 5	A	1171	1175	parallel
Strand 6	A	1194	1197	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1053	1059	first strand
Strand 2	A	1062	1068	anti-parallel
Strand 3	A	1031	1036	anti-parallel
Strand 4	A	1086	1089	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	111	115	parallel
Strand 3	B	5	10	parallel
Strand 4	B	332	335	parallel
Strand 5	B	354	355	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	211	215	anti-parallel
Strand 3	B	172	176	anti-parallel
Strand 4	B	235	238	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	539	first strand
Strand 2	B	489	494	parallel
Strand 3	B	564	571	parallel
Strand 4	B	609	617	anti-parallel
Strand 5	B	374	382	anti-parallel
Strand 6	B	630	639	anti-parallel
Strand 7	B	795	802	anti-parallel
Strand 8	B	784	790	anti-parallel
Strand 9	B	672	676	parallel
Strand 10	B	710	713	parallel
Strand 11	B	767	768	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	1249	1250	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	743	first strand
Strand 2	B	774	775	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	819	825	first strand
Strand 2	B	866	872	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1130	1132	first strand
Strand 2	B	1122	1125	anti-parallel
Strand 3	B	988	991	parallel
Strand 4	B	901	905	parallel
Strand 5	B	1171	1175	parallel
Strand 6	B	1194	1197	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1053	1059	first strand
Strand 2	B	1062	1068	anti-parallel
Strand 3	B	1031	1036	anti-parallel
Strand 4	B	1086	1089	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG4