Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CG5 entry

There are 3 chains in PDB entry 8CG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	PRO 1286
B	ALA 5	PRO 1286
C	ILE 11	SER 86

There are117 helices in PDB entry 8CG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	28	Right-handed alpha
Helix 2	AA2	A	32	51	Right-handed alpha
Helix 3	AA3	A	54	61	Right-handed alpha
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	69	77	Right-handed alpha
Helix 6	AA6	A	80	102	Right-handed alpha
Helix 7	AA7	A	120	130	Right-handed alpha
Helix 8	AA8	A	133	163	Right-handed alpha
Helix 9	AA9	A	184	199	Right-handed alpha
Helix 10	AB1	A	223	232	Right-handed alpha
Helix 11	AB2	A	256	264	Right-handed alpha
Helix 12	AB3	A	294	308	Right-handed alpha
Helix 13	AB4	A	312	314	Right-handed 310
Helix 14	AB5	A	315	328	Right-handed alpha
Helix 15	AB6	A	341	343	Right-handed 310
Helix 16	AB7	A	344	352	Right-handed alpha
Helix 17	AB8	A	361	366	Right-handed 310
Helix 18	AB9	A	398	409	Right-handed alpha
Helix 19	AC1	A	422	427	Right-handed alpha
Helix 20	AC2	A	462	466	Right-handed 310
Helix 21	AC3	A	467	484	Right-handed alpha
Helix 22	AC4	A	491	497	Right-handed 310
Helix 23	AC5	A	508	514	Right-handed alpha
Helix 24	AC6	A	515	518	Right-handed 310
Helix 25	AC7	A	522	528	Right-handed alpha
Helix 26	AC8	A	530	541	Right-handed alpha
Helix 27	AC9	A	554	569	Right-handed alpha
Helix 28	AD1	A	585	595	Right-handed alpha
Helix 29	AD2	A	628	634	Right-handed alpha
Helix 30	AD3	A	660	676	Right-handed alpha
Helix 31	AD4	A	678	680	Right-handed 310
Helix 32	AD5	A	692	708	Right-handed alpha
Helix 33	AD6	A	727	732	Right-handed alpha
Helix 34	AD7	A	737	753	Right-handed alpha
Helix 35	AD8	A	772	775	Right-handed 310
Helix 36	AD9	A	838	856	Right-handed alpha
Helix 37	AE1	A	862	873	Right-handed alpha
Helix 38	AE2	A	888	906	Right-handed alpha
Helix 39	AE3	A	934	941	Right-handed alpha
Helix 40	AE4	A	941	958	Right-handed alpha
Helix 41	AE5	A	964	969	Right-handed alpha
Helix 42	AE6	A	977	999	Right-handed alpha
Helix 43	AE7	A	1011	1020	Right-handed alpha
Helix 44	AE8	A	1024	1043	Right-handed alpha
Helix 45	AE9	A	1056	1064	Right-handed alpha
Helix 46	AF1	A	1089	1101	Right-handed alpha
Helix 47	AF2	A	1117	1122	Right-handed 310
Helix 48	AF3	A	1123	1132	Right-handed alpha
Helix 49	AF4	A	1154	1158	Right-handed 310
Helix 50	AF5	A	1159	1169	Right-handed alpha
Helix 51	AF6	A	1172	1184	Right-handed alpha
Helix 52	AF7	A	1200	1210	Right-handed alpha
Helix 53	AF8	A	1224	1240	Right-handed alpha
Helix 54	AF9	A	1244	1250	Right-handed alpha
Helix 55	AG1	A	1252	1256	Right-handed 310
Helix 56	AG2	A	1278	1282	Right-handed 310
Helix 57	AG3	B	19	27	Right-handed alpha
Helix 58	AG4	B	32	51	Right-handed alpha
Helix 59	AG5	B	54	59	Right-handed alpha
Helix 60	AG6	B	66	68	Right-handed 310
Helix 61	AG7	B	69	76	Right-handed alpha
Helix 62	AG8	B	80	102	Right-handed alpha
Helix 63	AG9	B	120	130	Right-handed alpha
Helix 64	AH1	B	133	163	Right-handed alpha
Helix 65	AH2	B	184	199	Right-handed alpha
Helix 66	AH3	B	223	232	Right-handed alpha
Helix 67	AH4	B	256	264	Right-handed alpha
Helix 68	AH5	B	265	267	Right-handed 310
Helix 69	AH6	B	294	308	Right-handed alpha
Helix 70	AH7	B	312	314	Right-handed 310
Helix 71	AH8	B	315	327	Right-handed alpha
Helix 72	AH9	B	341	343	Right-handed 310
Helix 73	AI1	B	344	351	Right-handed alpha
Helix 74	AI2	B	361	366	Right-handed 310
Helix 75	AI3	B	398	408	Right-handed alpha
Helix 76	AI4	B	422	427	Right-handed alpha
Helix 77	AI5	B	462	466	Right-handed 310
Helix 78	AI6	B	467	484	Right-handed alpha
Helix 79	AI7	B	491	497	Right-handed 310
Helix 80	AI8	B	508	513	Right-handed alpha
Helix 81	AI9	B	514	519	Right-handed 310
Helix 82	AJ1	B	522	528	Right-handed alpha
Helix 83	AJ2	B	530	541	Right-handed alpha
Helix 84	AJ3	B	554	569	Right-handed alpha
Helix 85	AJ4	B	585	595	Right-handed alpha
Helix 86	AJ5	B	628	634	Right-handed alpha
Helix 87	AJ6	B	660	676	Right-handed alpha
Helix 88	AJ7	B	692	708	Right-handed alpha
Helix 89	AJ8	B	727	732	Right-handed alpha
Helix 90	AJ9	B	737	753	Right-handed alpha
Helix 91	AK1	B	771	776	Right-handed alpha
Helix 92	AK2	B	838	856	Right-handed alpha
Helix 93	AK3	B	862	873	Right-handed alpha
Helix 94	AK4	B	888	906	Right-handed alpha
Helix 95	AK5	B	934	941	Right-handed alpha
Helix 96	AK6	B	941	958	Right-handed alpha
Helix 97	AK7	B	964	968	Right-handed 310
Helix 98	AK8	B	972	976	Right-handed 310
Helix 99	AK9	B	977	999	Right-handed alpha
Helix 100	AL1	B	1011	1021	Right-handed alpha
Helix 101	AL2	B	1024	1043	Right-handed alpha
Helix 102	AL3	B	1056	1064	Right-handed alpha
Helix 103	AL4	B	1089	1101	Right-handed alpha
Helix 104	AL5	B	1120	1122	Right-handed 310
Helix 105	AL6	B	1123	1134	Right-handed alpha
Helix 106	AL7	B	1154	1158	Right-handed 310
Helix 107	AL8	B	1159	1169	Right-handed alpha
Helix 108	AL9	B	1172	1184	Right-handed alpha
Helix 109	AM1	B	1200	1210	Right-handed alpha
Helix 110	AM2	B	1224	1240	Right-handed alpha
Helix 111	AM3	B	1244	1249	Right-handed alpha
Helix 112	AM4	B	1252	1256	Right-handed 310
Helix 113	AM5	B	1278	1283	Right-handed 310
Helix 114	AM6	C	12	27	Right-handed alpha
Helix 115	AM7	C	38	43	Right-handed alpha
Helix 116	AM8	C	45	60	Right-handed alpha
Helix 117	AM9	C	75	85	Right-handed alpha

There are 18 sheets in PDB entry 8CG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	280	281	anti-parallel
Strand 3	A	113	117	parallel
Strand 4	A	6	12	parallel
Strand 5	A	331	337	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	239	243	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	549	first strand
Strand 2	A	499	504	parallel
Strand 3	A	574	579	parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	384	392	anti-parallel
Strand 6	A	640	649	anti-parallel
Strand 7	A	806	813	anti-parallel
Strand 8	A	795	801	anti-parallel
Strand 9	A	682	686	parallel
Strand 10	A	722	725	parallel
Strand 11	A	777	778	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	441	443	anti-parallel
Strand 3	A	616	617	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	1269	1270	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	784	785	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	836	first strand
Strand 2	A	880	886	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1150	1152	first strand
Strand 2	A	1143	1145	anti-parallel
Strand 3	A	1003	1007	parallel
Strand 4	A	919	923	parallel
Strand 5	A	1191	1195	parallel
Strand 6	A	1215	1216	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1076	first strand
Strand 2	A	1083	1088	anti-parallel
Strand 3	A	1048	1053	anti-parallel
Strand 4	A	1106	1108	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	280	281	anti-parallel
Strand 3	B	113	117	parallel
Strand 4	B	7	12	parallel
Strand 5	B	332	337	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	549	first strand
Strand 2	B	499	504	parallel
Strand 3	B	574	581	parallel
Strand 4	B	619	627	anti-parallel
Strand 5	B	384	392	anti-parallel
Strand 6	B	640	649	anti-parallel
Strand 7	B	806	814	anti-parallel
Strand 8	B	795	801	anti-parallel
Strand 9	B	682	686	parallel
Strand 10	B	722	725	parallel
Strand 11	B	777	778	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	1269	1270	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	755	first strand
Strand 2	B	784	785	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	836	first strand
Strand 2	B	880	886	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1003	1008	first strand
Strand 2	B	918	923	parallel
Strand 3	B	1190	1195	parallel
Strand 4	B	1215	1216	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1073	1076	first strand
Strand 2	B	1083	1088	anti-parallel
Strand 3	B	1048	1053	anti-parallel
Strand 4	B	1106	1108	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1143	1145	first strand
Strand 2	B	1150	1152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG5