Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CG6 entry

There are 3 chains in PDB entry 8CG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	TRP 1272
B	ALA 5	LEU 1273
C	ILE 11	GLY 85

There are105 helices in PDB entry 8CG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	29	Right-handed alpha
Helix 2	AA2	A	33	51	Right-handed alpha
Helix 3	AA3	A	54	61	Right-handed alpha
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	69	77	Right-handed alpha
Helix 6	AA6	A	80	102	Right-handed alpha
Helix 7	AA7	A	120	131	Right-handed alpha
Helix 8	AA8	A	134	136	Right-handed 310
Helix 9	AA9	A	137	163	Right-handed alpha
Helix 10	AB1	A	166	170	Right-handed 310
Helix 11	AB2	A	184	200	Right-handed alpha
Helix 12	AB3	A	223	232	Right-handed alpha
Helix 13	AB4	A	256	264	Right-handed alpha
Helix 14	AB5	A	265	267	Right-handed 310
Helix 15	AB6	A	294	309	Right-handed alpha
Helix 16	AB7	A	313	328	Right-handed alpha
Helix 17	AB8	A	344	353	Right-handed alpha
Helix 18	AB9	A	398	409	Right-handed alpha
Helix 19	AC1	A	453	457	Right-handed 310
Helix 20	AC2	A	467	485	Right-handed alpha
Helix 21	AC3	A	491	495	Right-handed 310
Helix 22	AC4	A	531	540	Right-handed alpha
Helix 23	AC5	A	554	570	Right-handed alpha
Helix 24	AC6	A	628	634	Right-handed alpha
Helix 25	AC7	A	664	676	Right-handed alpha
Helix 26	AC8	A	678	682	Right-handed 310
Helix 27	AC9	A	692	708	Right-handed alpha
Helix 28	AD1	A	727	732	Right-handed alpha
Helix 29	AD2	A	737	753	Right-handed alpha
Helix 30	AD3	A	838	856	Right-handed alpha
Helix 31	AD4	A	863	874	Right-handed alpha
Helix 32	AD5	A	888	905	Right-handed alpha
Helix 33	AD6	A	925	929	Right-handed 310
Helix 34	AD7	A	934	941	Right-handed alpha
Helix 35	AD8	A	941	958	Right-handed alpha
Helix 36	AD9	A	964	969	Right-handed alpha
Helix 37	AE1	A	971	976	Right-handed 310
Helix 38	AE2	A	977	999	Right-handed alpha
Helix 39	AE3	A	1012	1020	Right-handed alpha
Helix 40	AE4	A	1024	1043	Right-handed alpha
Helix 41	AE5	A	1056	1064	Right-handed alpha
Helix 42	AE6	A	1089	1101	Right-handed alpha
Helix 43	AE7	A	1117	1122	Right-handed 310
Helix 44	AE8	A	1123	1132	Right-handed alpha
Helix 45	AE9	A	1154	1159	Right-handed 310
Helix 46	AF1	A	1160	1169	Right-handed alpha
Helix 47	AF2	A	1173	1184	Right-handed alpha
Helix 48	AF3	A	1200	1210	Right-handed alpha
Helix 49	AF4	A	1224	1240	Right-handed alpha
Helix 50	AF5	A	1247	1256	Right-handed 310
Helix 51	AF6	B	19	29	Right-handed alpha
Helix 52	AF7	B	32	51	Right-handed alpha
Helix 53	AF8	B	54	60	Right-handed alpha
Helix 54	AF9	B	66	69	Right-handed 310
Helix 55	AG1	B	70	77	Right-handed alpha
Helix 56	AG2	B	80	102	Right-handed alpha
Helix 57	AG3	B	121	131	Right-handed alpha
Helix 58	AG4	B	134	136	Right-handed 310
Helix 59	AG5	B	137	163	Right-handed alpha
Helix 60	AG6	B	184	199	Right-handed alpha
Helix 61	AG7	B	223	234	Right-handed alpha
Helix 62	AG8	B	256	265	Right-handed alpha
Helix 63	AG9	B	294	308	Right-handed alpha
Helix 64	AH1	B	312	314	Right-handed 310
Helix 65	AH2	B	315	328	Right-handed alpha
Helix 66	AH3	B	344	351	Right-handed alpha
Helix 67	AH4	B	398	408	Right-handed alpha
Helix 68	AH5	B	452	457	Right-handed 310
Helix 69	AH6	B	462	466	Right-handed 310
Helix 70	AH7	B	467	484	Right-handed alpha
Helix 71	AH8	B	528	530	Right-handed 310
Helix 72	AH9	B	531	540	Right-handed alpha
Helix 73	AI1	B	554	570	Right-handed alpha
Helix 74	AI2	B	628	635	Right-handed alpha
Helix 75	AI3	B	660	676	Right-handed alpha
Helix 76	AI4	B	678	680	Right-handed 310
Helix 77	AI5	B	693	708	Right-handed alpha
Helix 78	AI6	B	737	753	Right-handed alpha
Helix 79	AI7	B	772	776	Right-handed 310
Helix 80	AI8	B	838	855	Right-handed alpha
Helix 81	AI9	B	863	873	Right-handed alpha
Helix 82	AJ1	B	888	906	Right-handed alpha
Helix 83	AJ2	B	934	941	Right-handed alpha
Helix 84	AJ3	B	941	958	Right-handed alpha
Helix 85	AJ4	B	964	968	Right-handed 310
Helix 86	AJ5	B	971	976	Right-handed 310
Helix 87	AJ6	B	977	1000	Right-handed alpha
Helix 88	AJ7	B	1011	1021	Right-handed alpha
Helix 89	AJ8	B	1024	1043	Right-handed alpha
Helix 90	AJ9	B	1056	1063	Right-handed alpha
Helix 91	AK1	B	1089	1102	Right-handed alpha
Helix 92	AK2	B	1117	1122	Right-handed 310
Helix 93	AK3	B	1123	1133	Right-handed alpha
Helix 94	AK4	B	1154	1158	Right-handed 310
Helix 95	AK5	B	1159	1169	Right-handed alpha
Helix 96	AK6	B	1173	1183	Right-handed alpha
Helix 97	AK7	B	1200	1210	Right-handed alpha
Helix 98	AK8	B	1224	1240	Right-handed alpha
Helix 99	AK9	B	1244	1250	Right-handed alpha
Helix 100	AL1	B	1252	1256	Right-handed 310
Helix 101	AL2	C	12	27	Right-handed alpha
Helix 102	AL3	C	38	43	Right-handed alpha
Helix 103	AL4	C	45	60	Right-handed alpha
Helix 104	AL5	C	67	73	Right-handed alpha
Helix 105	AL6	C	75	85	Right-handed alpha

There are 21 sheets in PDB entry 8CG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	6	11	parallel
Strand 3	A	331	334	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	A	311	312	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	289	290	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	575	578	parallel
Strand 3	A	621	627	anti-parallel
Strand 4	A	384	391	anti-parallel
Strand 5	A	640	642	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	1269	1270	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	646	first strand
Strand 2	A	809	813	anti-parallel
Strand 3	A	795	796	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	686	first strand
Strand 2	A	723	725	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	784	785	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	836	first strand
Strand 2	A	880	886	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	920	first strand
Strand 2	A	1191	1192	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1007	first strand
Strand 2	A	1143	1145	parallel
Strand 3	A	1150	1152	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1109	first strand
Strand 2	A	1048	1054	anti-parallel
Strand 3	A	1082	1088	anti-parallel
Strand 4	A	1073	1077	anti-parallel
Strand 5	A	1171	1172	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	7	12	parallel
Strand 3	B	332	337	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	214	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	289	290	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	622	627	anti-parallel
Strand 3	B	574	577	anti-parallel
Strand 4	B	499	502	parallel
Strand 5	B	546	547	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	622	627	anti-parallel
Strand 3	B	384	386	anti-parallel
Strand 4	B	640	646	anti-parallel
Strand 5	B	809	813	anti-parallel
Strand 6	B	795	799	anti-parallel
Strand 7	B	682	687	parallel
Strand 8	B	723	726	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	1269	1270	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	836	first strand
Strand 2	B	880	886	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1150	1152	first strand
Strand 2	B	1143	1145	anti-parallel
Strand 3	B	1003	1007	parallel
Strand 4	B	919	923	parallel
Strand 5	B	1191	1197	parallel
Strand 6	B	1217	1219	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1109	first strand
Strand 2	B	1048	1054	anti-parallel
Strand 3	B	1082	1088	anti-parallel
Strand 4	B	1073	1077	anti-parallel
Strand 5	B	1171	1172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CG6