Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CGE entry

There are 2 chains in PDB entry 8CGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19GLN 281
B
 GLN 19LYS 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8CGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
80 83Right-handed 310
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
237 241Right-handed 310
Helix 5
AA5
B
46 50Right-handed 310
Helix 6
AA6
B
80 83Right-handed 310
Helix 7
AA7
B
92 94Right-handed 310
Helix 8
AA8
B
105 109Right-handed 310
Helix 9
AA9
B
237 241Right-handed 310
Helix 10
AB1
B
279 284Right-handed alpha
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There are 9 sheets in PDB entry 8CGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
86 91anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
132 136parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
51 57anti-parallel
Strand 5
A
63 70anti-parallel
Strand 6
A
75 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
177 183anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
220 225anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
203 207anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
243 248anti-parallel
Strand 5
A
260 264anti-parallel
Strand 6
A
168 171parallel
Strand 7
B
168 171anti-parallel
Strand 8
B
260 264parallel
Strand 9
B
242 248anti-parallel
Strand 10
B
191 196anti-parallel
Strand 11
B
203 207anti-parallel
Strand 12
B
211 212anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
260 264anti-parallel
Strand 4
A
168 171parallel
Strand 5
B
168 171anti-parallel
Strand 6
B
260 264parallel
Strand 7
B
242 248anti-parallel
Strand 8
B
255 256anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
B
272 277anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
96 101anti-parallel
Strand 4
B
86 91anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
132 136parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
52 58anti-parallel
Strand 5
B
62 69anti-parallel
Strand 6
B
76 78anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
177 183anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
220 225anti-parallel
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