Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CGG entry

There are 5 chains in PDB entry 8CGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 GLY 281GLN 360
A
 GLY 281GLN 360
B
 GLY 281GLN 360
C
 GLY 281GLN 360
D
 GLY 281GLN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8CGG

There are 7 sheets in PDB entry 8CGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 303first strand
Strand 2
B
297 303parallel
Strand 3
U
297 303parallel
Strand 4
C
297 303parallel
Strand 5
D
297 303parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
B
306 308parallel
Strand 3
U
306 308parallel
Strand 4
C
306 308parallel
Strand 5
D
306 308parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 318first strand
Strand 2
B
311 318parallel
Strand 3
U
311 318parallel
Strand 4
C
311 318parallel
Strand 5
D
311 318parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 331first strand
Strand 2
B
321 331parallel
Strand 3
U
321 331parallel
Strand 4
C
321 331parallel
Strand 5
D
321 331parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
B
334 336parallel
Strand 3
U
334 336parallel
Strand 4
C
334 336parallel
Strand 5
D
334 336parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
B
344 347parallel
Strand 3
U
344 347parallel
Strand 4
C
344 347parallel
Strand 5
D
344 347parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
B
353 355parallel
Strand 3
U
353 355parallel
Strand 4
C
353 355parallel
Strand 5
D
353 355parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il