Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CGJ entry

There are 28 chains in PDB entry 8CGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 2	G 515
A	G 517	C 526
A	C 528	G 1401
A	C 1403	U 1406
A	A 1408	G 1497
A	A 1499	G 1515
A	G 1517	G 1517
A	C 1520	A 1534
B	SER 5	SER 226
C	GLU 110	ILE 207
D	ALA 2	LYS 206
E	LEU 11	ILE 164
F	MET 1	PRO 101
H	SER 2	ALA 130
K	ARG 13	HIS 118
K	GLY 120	VAL 129
L	ALA 2	LYS 88
L	LEU 90	PRO 122
O	SER 2	ARG 89
P	MET 1	ASN 79
Q	LYS 4	ALA 82
R	CYS 11	HIS 74
U	PRO 2	HIS 56
T	ALA 2	ALA 87
a	C 1905	G 1910
a	A 1912	C 1914
a	A 1916	A 1916
a	A 1918	G 1935

There are 57 helices in PDB entry 8CGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	13	Right-handed alpha
Helix 2	AA2	B	21	23	Right-handed 310
Helix 3	AA3	B	24	28	Right-handed 310
Helix 4	AA4	B	42	62	Right-handed alpha
Helix 5	AA5	B	83	88	Right-handed alpha
Helix 6	AA6	B	103	115	Right-handed alpha
Helix 7	AA7	B	143	149	Right-handed alpha
Helix 8	AA8	B	150	152	Right-handed 310
Helix 9	AA9	B	169	180	Right-handed alpha
Helix 10	AB1	B	206	226	Right-handed alpha
Helix 11	AB2	C	112	126	Right-handed alpha
Helix 12	AB3	C	129	138	Right-handed alpha
Helix 13	AB4	C	156	160	Right-handed 310
Helix 14	AB5	D	8	16	Right-handed alpha
Helix 15	AB6	D	27	32	Right-handed alpha
Helix 16	AB7	D	49	66	Right-handed alpha
Helix 17	AB8	D	68	82	Right-handed alpha
Helix 18	AB9	D	85	96	Right-handed alpha
Helix 19	AC1	D	97	106	Right-handed alpha
Helix 20	AC2	D	110	118	Right-handed alpha
Helix 21	AC3	D	152	163	Right-handed alpha
Helix 22	AC4	D	197	206	Right-handed alpha
Helix 23	AC5	E	55	70	Right-handed alpha
Helix 24	AC6	E	108	119	Right-handed alpha
Helix 25	AC7	E	132	146	Right-handed alpha
Helix 26	AC8	E	149	158	Right-handed alpha
Helix 27	AC9	F	12	16	Right-handed 310
Helix 28	AD1	F	17	31	Right-handed alpha
Helix 29	AD2	F	67	80	Right-handed alpha
Helix 30	AD3	H	5	20	Right-handed alpha
Helix 31	AD4	H	30	43	Right-handed alpha
Helix 32	AD5	H	88	92	Right-handed 310
Helix 33	AD6	H	95	99	Right-handed 310
Helix 34	AD7	H	113	120	Right-handed alpha
Helix 35	AD8	K	59	74	Right-handed alpha
Helix 36	AD9	K	75	78	Right-handed 310
Helix 37	AE1	K	94	103	Right-handed alpha
Helix 38	AE2	L	3	10	Right-handed alpha
Helix 39	AE3	L	21	25	Right-handed 310
Helix 40	AE4	L	113	117	Right-handed 310
Helix 41	AE5	O	4	16	Right-handed alpha
Helix 42	AE6	O	24	46	Right-handed alpha
Helix 43	AE7	O	49	74	Right-handed alpha
Helix 44	AE8	O	74	86	Right-handed alpha
Helix 45	AE9	P	53	63	Right-handed alpha
Helix 46	AF1	P	68	79	Right-handed alpha
Helix 47	AF2	R	12	16	Right-handed alpha
Helix 48	AF3	R	25	30	Right-handed alpha
Helix 49	AF4	R	31	33	Right-handed 310
Helix 50	AF5	R	41	46	Right-handed alpha
Helix 51	AF6	R	48	65	Right-handed alpha
Helix 52	AF7	U	11	27	Right-handed alpha
Helix 53	AF8	U	27	35	Right-handed alpha
Helix 54	AF9	U	40	56	Right-handed alpha
Helix 55	AG1	T	4	42	Right-handed alpha
Helix 56	AG2	T	43	64	Right-handed alpha
Helix 57	AG3	T	68	85	Right-handed alpha

There are 15 sheets in PDB entry 8CGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	31	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	90	91	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	184	187	parallel
Strand 3	B	198	201	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	149	155	anti-parallel
Strand 3	C	195	202	anti-parallel
Strand 4	C	189	190	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	179	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	24	first strand
Strand 2	E	29	40	anti-parallel
Strand 3	E	45	53	anti-parallel
Strand 4	E	71	73	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	92	98	anti-parallel
Strand 3	E	123	129	anti-parallel
Strand 4	E	105	106	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	51	first strand
Strand 2	F	54	66	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	84	92	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	28	first strand
Strand 2	H	58	63	anti-parallel
Strand 3	H	46	52	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	123	130	anti-parallel
Strand 3	H	86	87	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	123	130	anti-parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	46	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	18	25	anti-parallel
Strand 4	K	81	87	parallel
Strand 5	K	106	112	parallel
Strand 6	U	3	5	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	40	first strand
Strand 2	L	50	57	anti-parallel
Strand 3	L	62	66	anti-parallel
Strand 4	L	95	97	parallel
Strand 5	L	79	84	anti-parallel
Strand 6	L	29	40	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	52	first strand
Strand 2	P	34	39	anti-parallel
Strand 3	P	14	23	anti-parallel
Strand 4	P	2	11	anti-parallel
Strand 5	P	66	67	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	8	14	first strand
Strand 2	Q	20	30	anti-parallel
Strand 3	Q	37	47	anti-parallel
Strand 4	Q	71	80	parallel
Strand 5	Q	58	63	anti-parallel
Strand 6	Q	8	14	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGJ