Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CGP entry

There are 2 chains in PDB entry 8CGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 158	THR 1027
B	LYS 159	SER 536

There are 78 helices in PDB entry 8CGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	298	303	Right-handed alpha
Helix 2	AA2	A	355	359	Right-handed 310
Helix 3	AA3	A	383	389	Right-handed 310
Helix 4	AA4	A	390	409	Right-handed alpha
Helix 5	AA5	A	440	444	Right-handed alpha
Helix 6	AA6	A	451	468	Right-handed alpha
Helix 7	AA7	A	479	482	Right-handed 310
Helix 8	AA8	A	483	502	Right-handed alpha
Helix 9	AA9	A	503	506	Right-handed 310
Helix 10	AB1	A	507	523	Right-handed alpha
Helix 11	AB2	A	536	543	Right-handed alpha
Helix 12	AB3	A	545	563	Right-handed alpha
Helix 13	AB4	A	564	580	Right-handed alpha
Helix 14	AB5	A	585	597	Right-handed alpha
Helix 15	AB6	A	602	607	Right-handed alpha
Helix 16	AB7	A	607	613	Right-handed alpha
Helix 17	AB8	A	694	697	Right-handed 310
Helix 18	AB9	A	705	719	Right-handed alpha
Helix 19	AC1	A	720	723	Right-handed 310
Helix 20	AC2	A	724	742	Right-handed alpha
Helix 21	AC3	A	745	754	Right-handed alpha
Helix 22	AC4	A	755	759	Right-handed 310
Helix 23	AC5	A	761	782	Right-handed alpha
Helix 24	AC6	A	784	799	Right-handed alpha
Helix 25	AC7	A	799	806	Right-handed alpha
Helix 26	AC8	A	813	830	Right-handed alpha
Helix 27	AC9	A	834	849	Right-handed alpha
Helix 28	AD1	A	856	858	Right-handed 310
Helix 29	AD2	A	859	868	Right-handed alpha
Helix 30	AD3	A	870	882	Right-handed alpha
Helix 31	AD4	A	886	898	Right-handed alpha
Helix 32	AD5	A	902	916	Right-handed alpha
Helix 33	AD6	A	920	922	Right-handed 310
Helix 34	AD7	A	923	934	Right-handed alpha
Helix 35	AD8	A	937	948	Right-handed alpha
Helix 36	AD9	A	948	956	Right-handed alpha
Helix 37	AE1	A	960	972	Right-handed alpha
Helix 38	AE2	A	976	989	Right-handed alpha
Helix 39	AE3	A	991	996	Right-handed alpha
Helix 40	AE4	A	997	1025	Right-handed alpha
Helix 41	AE5	B	298	303	Right-handed alpha
Helix 42	AE6	B	355	359	Right-handed 310
Helix 43	AE7	B	383	389	Right-handed 310
Helix 44	AE8	B	390	409	Right-handed alpha
Helix 45	AE9	B	440	444	Right-handed alpha
Helix 46	AF1	B	451	468	Right-handed alpha
Helix 47	AF2	B	479	482	Right-handed 310
Helix 48	AF3	B	483	502	Right-handed alpha
Helix 49	AF4	B	503	506	Right-handed 310
Helix 50	AF5	B	507	523	Right-handed alpha
Helix 51	AF6	B	536	543	Right-handed alpha
Helix 52	AF7	B	545	563	Right-handed alpha
Helix 53	AF8	B	564	579	Right-handed alpha
Helix 54	AF9	B	585	597	Right-handed alpha
Helix 55	AG1	B	602	613	Right-handed alpha
Helix 56	AG2	B	705	719	Right-handed alpha
Helix 57	AG3	B	720	723	Right-handed 310
Helix 58	AG4	B	724	741	Right-handed alpha
Helix 59	AG5	B	745	754	Right-handed alpha
Helix 60	AG6	B	755	759	Right-handed 310
Helix 61	AG7	B	761	782	Right-handed alpha
Helix 62	AG8	B	784	799	Right-handed alpha
Helix 63	AG9	B	799	805	Right-handed alpha
Helix 64	AH1	B	813	830	Right-handed alpha
Helix 65	AH2	B	834	849	Right-handed alpha
Helix 66	AH3	B	856	858	Right-handed 310
Helix 67	AH4	B	859	868	Right-handed alpha
Helix 68	AH5	B	870	884	Right-handed alpha
Helix 69	AH6	B	886	898	Right-handed alpha
Helix 70	AH7	B	902	916	Right-handed alpha
Helix 71	AH8	B	920	922	Right-handed 310
Helix 72	AH9	B	923	934	Right-handed alpha
Helix 73	AI1	B	937	948	Right-handed alpha
Helix 74	AI2	B	948	956	Right-handed alpha
Helix 75	AI3	B	960	972	Right-handed alpha
Helix 76	AI4	B	976	989	Right-handed alpha
Helix 77	AI5	B	991	996	Right-handed alpha
Helix 78	AI6	B	997	1025	Right-handed alpha

There are 15 sheets in PDB entry 8CGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	215	222	anti-parallel
Strand 3	A	255	266	anti-parallel
Strand 4	A	189	200	anti-parallel
Strand 5	A	172	184	anti-parallel
Strand 6	A	314	322	parallel
Strand 7	A	343	348	anti-parallel
Strand 8	A	333	339	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	242	251	anti-parallel
Strand 3	A	233	237	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	286	293	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	361	364	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	416	422	parallel
Strand 4	A	435	439	parallel
Strand 5	A	429	430	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	582	584	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	682	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	617	624	anti-parallel
Strand 4	A	701	704	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	674	first strand
Strand 2	A	654	662	anti-parallel
Strand 3	A	687	692	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	214	221	anti-parallel
Strand 3	B	256	266	anti-parallel
Strand 4	B	189	200	anti-parallel
Strand 5	B	172	184	anti-parallel
Strand 6	B	314	321	parallel
Strand 7	B	344	348	anti-parallel
Strand 8	B	333	338	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	242	251	anti-parallel
Strand 3	B	233	237	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	280	first strand
Strand 2	B	286	293	anti-parallel
Strand 3	B	361	364	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	373	first strand
Strand 2	B	376	382	anti-parallel
Strand 3	B	416	422	parallel
Strand 4	B	435	439	parallel
Strand 5	B	429	430	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	582	584	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	682	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	617	624	anti-parallel
Strand 4	B	701	704	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	674	first strand
Strand 2	B	654	662	anti-parallel
Strand 3	B	687	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGP