Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CGQ entry

There is 1 chain in PDB entry 8CGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11ARG 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8CGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 41Right-handed alpha
Helix 2
AA2
A
54 68Right-handed alpha
Helix 3
AA3
A
83 87Right-handed 310
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
103 105Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
147 164Right-handed alpha
Helix 9
AA9
A
186 190Right-handed 310
Helix 10
AB1
A
191 196Right-handed 310
Helix 11
AB2
A
199 212Right-handed alpha
Helix 12
AB3
A
213 215Right-handed 310
Helix 13
AB4
A
227 237Right-handed alpha
Helix 14
AB5
A
238 241Right-handed 310
Helix 15
AB6
A
265 273Right-handed alpha
Helix 16
AB7
A
291 306Right-handed alpha
Helix 17
AB8
A
318 322Right-handed 310
Helix 18
AB9
A
325 331Right-handed alpha
Helix 19
AC1
A
331 339Right-handed alpha
Helix 20
AC2
A
350 356Right-handed alpha
Helix 21
AC3
A
368 379Right-handed alpha
Helix 22
AC4
A
390 401Right-handed alpha
Helix 23
AC5
A
420 434Right-handed alpha
Helix 24
AC6
A
434 453Right-handed alpha
Helix 25
AC7
A
456 471Right-handed alpha
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There are 3 sheets in PDB entry 8CGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
43 49parallel
Strand 3
A
14 18parallel
Strand 4
A
118 122parallel
Strand 5
A
140 144parallel
Strand 6
A
217 220parallel
Strand 7
A
248 250parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
184 185anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
308 312parallel
Strand 3
A
279 283parallel
Strand 4
A
360 365parallel
Strand 5
A
382 384parallel
Strand 6
A
404 406parallel
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