Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CGW entry

There are 2 chains in PDB entry 8CGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 160	THR 1027
B	LYS 159	SER 554

There are 76 helices in PDB entry 8CGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	298	303	Right-handed alpha
Helix 2	AA2	A	355	359	Right-handed 310
Helix 3	AA3	A	383	389	Right-handed 310
Helix 4	AA4	A	390	409	Right-handed alpha
Helix 5	AA5	A	440	444	Right-handed alpha
Helix 6	AA6	A	451	468	Right-handed alpha
Helix 7	AA7	A	479	481	Right-handed 310
Helix 8	AA8	A	482	501	Right-handed alpha
Helix 9	AA9	A	502	506	Right-handed 310
Helix 10	AB1	A	507	523	Right-handed alpha
Helix 11	AB2	A	536	541	Right-handed alpha
Helix 12	AB3	A	545	563	Right-handed alpha
Helix 13	AB4	A	564	579	Right-handed alpha
Helix 14	AB5	A	585	597	Right-handed alpha
Helix 15	AB6	A	602	612	Right-handed alpha
Helix 16	AB7	A	694	697	Right-handed 310
Helix 17	AB8	A	705	716	Right-handed alpha
Helix 18	AB9	A	719	723	Right-handed 310
Helix 19	AC1	A	724	741	Right-handed alpha
Helix 20	AC2	A	745	753	Right-handed alpha
Helix 21	AC3	A	754	759	Right-handed 310
Helix 22	AC4	A	761	783	Right-handed alpha
Helix 23	AC5	A	784	799	Right-handed alpha
Helix 24	AC6	A	799	805	Right-handed alpha
Helix 25	AC7	A	815	830	Right-handed alpha
Helix 26	AC8	A	834	849	Right-handed alpha
Helix 27	AC9	A	856	868	Right-handed alpha
Helix 28	AD1	A	870	882	Right-handed alpha
Helix 29	AD2	A	888	898	Right-handed alpha
Helix 30	AD3	A	902	915	Right-handed alpha
Helix 31	AD4	A	920	922	Right-handed 310
Helix 32	AD5	A	923	933	Right-handed alpha
Helix 33	AD6	A	934	936	Right-handed 310
Helix 34	AD7	A	937	948	Right-handed alpha
Helix 35	AD8	A	948	956	Right-handed alpha
Helix 36	AD9	A	960	970	Right-handed alpha
Helix 37	AE1	A	976	989	Right-handed alpha
Helix 38	AE2	A	991	996	Right-handed alpha
Helix 39	AE3	A	997	1025	Right-handed alpha
Helix 40	AE4	B	355	359	Right-handed 310
Helix 41	AE5	B	383	389	Right-handed 310
Helix 42	AE6	B	390	409	Right-handed alpha
Helix 43	AE7	B	440	444	Right-handed alpha
Helix 44	AE8	B	451	468	Right-handed alpha
Helix 45	AE9	B	479	481	Right-handed 310
Helix 46	AF1	B	482	501	Right-handed alpha
Helix 47	AF2	B	502	506	Right-handed 310
Helix 48	AF3	B	507	523	Right-handed alpha
Helix 49	AF4	B	536	543	Right-handed alpha
Helix 50	AF5	B	545	563	Right-handed alpha
Helix 51	AF6	B	564	579	Right-handed alpha
Helix 52	AF7	B	586	595	Right-handed alpha
Helix 53	AF8	B	603	606	Right-handed 310
Helix 54	AF9	B	607	612	Right-handed alpha
Helix 55	AG1	B	694	697	Right-handed 310
Helix 56	AG2	B	705	719	Right-handed alpha
Helix 57	AG3	B	720	723	Right-handed 310
Helix 58	AG4	B	724	741	Right-handed alpha
Helix 59	AG5	B	745	753	Right-handed alpha
Helix 60	AG6	B	754	759	Right-handed 310
Helix 61	AG7	B	761	783	Right-handed alpha
Helix 62	AG8	B	784	805	Right-handed alpha
Helix 63	AG9	B	813	831	Right-handed alpha
Helix 64	AH1	B	834	849	Right-handed alpha
Helix 65	AH2	B	859	868	Right-handed alpha
Helix 66	AH3	B	870	882	Right-handed alpha
Helix 67	AH4	B	887	898	Right-handed alpha
Helix 68	AH5	B	902	915	Right-handed alpha
Helix 69	AH6	B	920	922	Right-handed 310
Helix 70	AH7	B	923	933	Right-handed alpha
Helix 71	AH8	B	937	948	Right-handed alpha
Helix 72	AH9	B	948	956	Right-handed alpha
Helix 73	AI1	B	960	972	Right-handed alpha
Helix 74	AI2	B	976	989	Right-handed alpha
Helix 75	AI3	B	991	996	Right-handed alpha
Helix 76	AI4	B	997	1018	Right-handed alpha

There are 14 sheets in PDB entry 8CGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	215	223	anti-parallel
Strand 3	A	256	266	anti-parallel
Strand 4	A	189	200	anti-parallel
Strand 5	A	172	183	anti-parallel
Strand 6	A	314	321	parallel
Strand 7	A	344	348	anti-parallel
Strand 8	A	333	338	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	242	251	anti-parallel
Strand 3	A	234	237	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	286	293	anti-parallel
Strand 3	A	361	364	anti-parallel
Strand 4	A	326	329	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	416	422	parallel
Strand 4	A	435	439	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	582	584	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	682	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	617	623	anti-parallel
Strand 4	A	701	704	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	657	661	anti-parallel
Strand 3	A	689	692	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	256	266	anti-parallel
Strand 4	B	189	199	anti-parallel
Strand 5	B	173	182	anti-parallel
Strand 6	B	314	319	parallel
Strand 7	B	346	348	anti-parallel
Strand 8	B	333	336	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	242	251	anti-parallel
Strand 3	B	234	236	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	279	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	362	364	anti-parallel
Strand 4	B	326	328	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	373	first strand
Strand 2	B	376	382	anti-parallel
Strand 3	B	416	422	parallel
Strand 4	B	435	439	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	582	584	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	682	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	617	624	anti-parallel
Strand 4	B	701	704	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	669	674	first strand
Strand 2	B	654	661	anti-parallel
Strand 3	B	689	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CGW