Analysis of interatomic Contacts of Structural Units in PDB entry:
8CHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CHD entry

There are 2 chains in PDB entry 8CHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11VAL 475
B
 ASN 12LEU 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8CHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 41Right-handed alpha
Helix 2
AA2
A
55 64Right-handed alpha
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
99 114Right-handed alpha
Helix 5
AA5
A
125 127Right-handed 310
Helix 6
AA6
A
128 135Right-handed alpha
Helix 7
AA7
A
146 163Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
196 209Right-handed alpha
Helix 12
AB3
A
210 212Right-handed 310
Helix 13
AB4
A
220 233Right-handed alpha
Helix 14
AB5
A
260 267Right-handed alpha
Helix 15
AB6
A
285 300Right-handed alpha
Helix 16
AB7
A
316 320Right-handed 310
Helix 17
AB8
A
327 332Right-handed 310
Helix 18
AB9
A
335 341Right-handed alpha
Helix 19
AC1
A
352 359Right-handed alpha
Helix 20
AC2
A
370 380Right-handed alpha
Helix 21
AC3
A
392 403Right-handed alpha
Helix 22
AC4
A
419 432Right-handed alpha
Helix 23
AC5
A
434 454Right-handed alpha
Helix 24
AC6
A
458 473Right-handed alpha
Helix 25
AC7
B
22 41Right-handed alpha
Helix 26
AC8
B
55 63Right-handed alpha
Helix 27
AC9
B
87 98Right-handed alpha
Helix 28
AD1
B
99 114Right-handed alpha
Helix 29
AD2
B
125 127Right-handed 310
Helix 30
AD3
B
128 135Right-handed alpha
Helix 31
AD4
B
146 163Right-handed alpha
Helix 32
AD5
B
166 170Right-handed 310
Helix 33
AD6
B
183 187Right-handed 310
Helix 34
AD7
B
188 192Right-handed 310
Helix 35
AD8
B
196 209Right-handed alpha
Helix 36
AD9
B
210 212Right-handed 310
Helix 37
AE1
B
220 232Right-handed alpha
Helix 38
AE2
B
260 267Right-handed alpha
Helix 39
AE3
B
285 300Right-handed alpha
Helix 40
AE4
B
327 332Right-handed 310
Helix 41
AE5
B
335 341Right-handed alpha
Helix 42
AE6
B
352 359Right-handed alpha
Helix 43
AE7
B
370 380Right-handed alpha
Helix 44
AE8
B
392 403Right-handed alpha
Helix 45
AE9
B
419 432Right-handed alpha
Helix 46
AF1
B
433 435Right-handed 310
Helix 47
AF2
B
436 454Right-handed alpha
Helix 48
AF3
B
458 473Right-handed alpha
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There are 4 sheets in PDB entry 8CHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
13 18parallel
Strand 4
A
115 122parallel
Strand 5
A
139 143parallel
Strand 6
A
214 217parallel
Strand 7
A
241 243parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
302 307parallel
Strand 3
A
273 277parallel
Strand 4
A
362 367parallel
Strand 5
A
384 386parallel
Strand 6
A
407 408parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
43 48parallel
Strand 3
B
13 18parallel
Strand 4
B
115 122parallel
Strand 5
B
139 143parallel
Strand 6
B
214 217parallel
Strand 7
B
241 243parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
302 307parallel
Strand 3
B
273 277parallel
Strand 4
B
362 367parallel
Strand 5
B
384 386parallel
Strand 6
B
407 408parallel
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