Analysis of interatomic Contacts of Structural Units in PDB entry:
8CHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CHF entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 8CHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 341ALA 620
A
 GLU 622HIS 626
B
 ASP 341ALA 620
B
 GLU 622HIS 626
C
 VAL 4ASP 237
D
 VAL 4ASP 237
E
 GLU 62ILE 379
F
 GLU 62ILE 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8CHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 399Right-handed alpha
Helix 2
AA2
A
428 435Right-handed alpha
Helix 3
AA3
A
441 462Right-handed alpha
Helix 4
AA4
A
513 519Right-handed alpha
Helix 5
AA5
A
526 542Right-handed alpha
Helix 6
AA6
A
553 563Right-handed alpha
Helix 7
AA7
A
569 573Right-handed 310
Helix 8
AA8
A
578 589Right-handed alpha
Helix 9
AA9
A
592 596Right-handed 310
Helix 10
AB1
A
598 612Right-handed alpha
Helix 11
AB2
B
383 399Right-handed alpha
Helix 12
AB3
B
428 435Right-handed alpha
Helix 13
AB4
B
441 462Right-handed alpha
Helix 14
AB5
B
513 519Right-handed alpha
Helix 15
AB6
B
526 542Right-handed alpha
Helix 16
AB7
B
553 563Right-handed alpha
Helix 17
AB8
B
569 573Right-handed 310
Helix 18
AB9
B
578 589Right-handed alpha
Helix 19
AC1
B
592 596Right-handed 310
Helix 20
AC2
B
598 612Right-handed alpha
Helix 21
AC3
C
5 18Right-handed alpha
Helix 22
AC4
C
22 36Right-handed alpha
Helix 23
AC5
C
40 72Right-handed alpha
Helix 24
AC6
C
80 111Right-handed alpha
Helix 25
AC7
C
117 139Right-handed alpha
Helix 26
AC8
C
141 166Right-handed alpha
Helix 27
AC9
C
170 187Right-handed alpha
Helix 28
AD1
C
190 208Right-handed alpha
Helix 29
AD2
C
209 212Right-handed 310
Helix 30
AD3
C
213 236Right-handed alpha
Helix 31
AD4
D
5 18Right-handed alpha
Helix 32
AD5
D
22 36Right-handed alpha
Helix 33
AD6
D
40 72Right-handed alpha
Helix 34
AD7
D
80 111Right-handed alpha
Helix 35
AD8
D
117 139Right-handed alpha
Helix 36
AD9
D
141 166Right-handed alpha
Helix 37
AE1
D
170 187Right-handed alpha
Helix 38
AE2
D
190 208Right-handed alpha
Helix 39
AE3
D
209 212Right-handed 310
Helix 40
AE4
D
213 236Right-handed alpha
Helix 41
AE5
E
104 109Right-handed alpha
Helix 42
AE6
E
110 120Right-handed alpha
Helix 43
AE7
E
150 159Right-handed alpha
Helix 44
AE8
E
162 184Right-handed alpha
Helix 45
AE9
E
192 196Right-handed 310
Helix 46
AF1
E
212 221Right-handed alpha
Helix 47
AF2
E
231 237Right-handed alpha
Helix 48
AF3
E
241 259Right-handed alpha
Helix 49
AF4
E
267 273Right-handed alpha
Helix 50
AF5
E
309 320Right-handed alpha
Helix 51
AF6
E
331 342Right-handed alpha
Helix 52
AF7
E
345 349Right-handed 310
Helix 53
AF8
E
351 358Right-handed alpha
Helix 54
AF9
E
358 367Right-handed alpha
Helix 55
AG1
E
370 379Right-handed alpha
Helix 56
AG2
F
104 109Right-handed alpha
Helix 57
AG3
F
110 120Right-handed alpha
Helix 58
AG4
F
150 159Right-handed alpha
Helix 59
AG5
F
162 184Right-handed alpha
Helix 60
AG6
F
192 196Right-handed 310
Helix 61
AG7
F
212 221Right-handed alpha
Helix 62
AG8
F
231 237Right-handed alpha
Helix 63
AG9
F
241 259Right-handed alpha
Helix 64
AH1
F
267 273Right-handed alpha
Helix 65
AH2
F
309 320Right-handed alpha
Helix 66
AH3
F
331 342Right-handed alpha
Helix 67
AH4
F
345 349Right-handed 310
Helix 68
AH5
F
351 358Right-handed alpha
Helix 69
AH6
F
358 367Right-handed alpha
Helix 70
AH7
F
370 379Right-handed alpha
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There are 8 sheets in PDB entry 8CHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
362 364anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
408 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
491 492anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
362 364anti-parallel
Strand 3
B
372 376anti-parallel
Strand 4
B
418 422anti-parallel
Strand 5
B
408 412anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
491 492anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
68 72first strand
Strand 2
E
84 87anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 96first strand
Strand 2
E
139 144anti-parallel
Strand 3
E
129 134anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
68 72first strand
Strand 2
F
84 87anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 96first strand
Strand 2
F
139 144anti-parallel
Strand 3
F
129 134anti-parallel
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