Analysis of interatomic Contacts of Structural Units in PDB entry:
8CHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CHS entry

There are 2 chains in PDB entry 8CHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLN 1VAL 125
A
 ASP 82ARG 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8CHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
86 90Right-handed 310
Helix 2
AA2
A
94 107Right-handed alpha
Helix 3
AA3
A
140 146Right-handed alpha
Helix 4
AA4
A
148 163Right-handed alpha
Helix 5
AA5
A
287 302Right-handed alpha
Helix 6
AA6
A
331 345Right-handed alpha
Helix 7
AA7
A
367 375Right-handed alpha
Helix 8
AA8
A
376 379Right-handed 310
Helix 9
AA9
A
401 419Right-handed alpha
Helix 10
AB1
A
440 451Right-handed alpha
Helix 11
AB2
A
501 510Right-handed alpha
Helix 12
AB3
A
512 520Right-handed alpha
Helix 13
AB4
A
529 533Right-handed 310
Helix 14
AB5
A
537 554Right-handed alpha
Helix 15
AB6
A
562 574Right-handed alpha
Helix 16
AB7
A
588 595Right-handed alpha
Helix 17
AB8
A
616 623Right-handed alpha
Helix 18
AB9
A
648 653Right-handed 310
Helix 19
AC1
A
654 661Right-handed alpha
Helix 20
AC2
A
678 681Right-handed 310
Helix 21
AC3
A
684 694Right-handed alpha
Helix 22
AC4
A
705 720Right-handed alpha
Helix 23
AC5
A
722 728Right-handed alpha
Helix 24
AC6
A
729 734Right-handed alpha
Helix 25
AC7
A
741 752Right-handed alpha
Helix 26
AC8
A
753 755Right-handed 310
Helix 27
AC9
A
756 766Right-handed alpha
Helix 28
AD1
A
778 784Right-handed alpha
Helix 29
AD2
A
784 797Right-handed alpha
Helix 30
AD3
A
803 808Right-handed alpha
Helix 31
AD4
A
830 834Right-handed 310
Helix 32
AD5
A
841 852Right-handed alpha
Helix 33
AD6
A
852 866Right-handed alpha
Helix 34
AD7
A
871 882Right-handed alpha
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There are 8 sheets in PDB entry 8CHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
68 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
35 38anti-parallel
Strand 4
D
91 96anti-parallel
Strand 5
D
121 123anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
84 89parallel
Strand 3
A
133 138parallel
Strand 4
A
165 169parallel
Strand 5
A
278 281parallel
Strand 6
A
266 269anti-parallel
Strand 7
A
235 237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
523 525parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
355 358parallel
Strand 3
A
386 387parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
455 458parallel
Strand 3
A
478 482parallel
Strand 4
A
473 475anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 676first strand
Strand 2
A
607 611parallel
Strand 3
A
698 703parallel
Strand 4
A
775 777parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 810first strand
Strand 2
A
817 818anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il