Analysis of interatomic Contacts of Structural Units in PDB entry:
8CHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CHU entry

There are 2 chains in PDB entry 8CHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58GLU 212
B
 GLY 55GLY 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8CHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 123Right-handed alpha
Helix 2
AA2
A
194 210Right-handed alpha
Helix 3
AA3
B
93 95Right-handed 310
Helix 4
AA4
B
104 125Right-handed alpha
Helix 5
AA5
B
194 209Right-handed alpha
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There are 4 sheets in PDB entry 8CHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 68first strand
Strand 2
A
71 79anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
97 103anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
187 191anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
153 161anti-parallel
Strand 4
A
145 150anti-parallel
Strand 5
B
147 151anti-parallel
Strand 6
B
155 162anti-parallel
Strand 7
B
167 174anti-parallel
Strand 8
B
186 191anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 68first strand
Strand 2
B
71 80anti-parallel
Strand 3
B
83 91anti-parallel
Strand 4
B
97 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il