Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CI1 entry

There are 10 chains in PDB entry 8CI1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LEU 208
B	GLU 1	LEU 208
C	GLU 1	LEU 208
D	GLU 1	LEU 208
E	GLU 1	LEU 208
F	ALA 1	SER 124
G	ALA 1	SER 124
H	ALA 1	SER 124
I	ALA 1	SER 124
J	ALA 1	SER 124

There are 15 helices in PDB entry 8CI1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	B	2	12	Right-handed alpha
Helix 3	AA3	C	2	12	Right-handed alpha
Helix 4	AA4	D	2	12	Right-handed alpha
Helix 5	AA5	E	2	12	Right-handed alpha
Helix 6	AA6	F	28	30	Right-handed 310
Helix 7	AA7	F	87	91	Right-handed 310
Helix 8	AA8	G	28	30	Right-handed 310
Helix 9	AA9	G	87	91	Right-handed 310
Helix 10	AB1	H	28	30	Right-handed 310
Helix 11	AB2	H	87	91	Right-handed 310
Helix 12	AB3	I	28	30	Right-handed 310
Helix 13	AB4	I	87	91	Right-handed 310
Helix 14	AB5	J	28	30	Right-handed 310
Helix 15	AB6	J	87	91	Right-handed 310

There are 30 sheets in PDB entry 8CI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	120	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	107	110	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	48	60	anti-parallel
Strand 5	A	28	43	anti-parallel
Strand 6	A	155	159	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	190	200	anti-parallel
Strand 4	A	180	187	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	203	205	anti-parallel
Strand 3	A	173	175	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	114	117	anti-parallel
Strand 4	B	48	60	anti-parallel
Strand 5	B	120	126	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	107	110	anti-parallel
Strand 3	B	114	117	anti-parallel
Strand 4	B	48	60	anti-parallel
Strand 5	B	28	43	anti-parallel
Strand 6	B	155	159	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	190	200	anti-parallel
Strand 4	B	180	187	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	203	205	anti-parallel
Strand 3	B	173	175	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	120	126	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	107	110	anti-parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	48	60	anti-parallel
Strand 5	C	28	43	anti-parallel
Strand 6	C	155	159	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	190	200	anti-parallel
Strand 4	C	180	187	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	203	205	anti-parallel
Strand 3	C	173	175	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	120	126	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	107	110	anti-parallel
Strand 3	D	114	117	anti-parallel
Strand 4	D	48	60	anti-parallel
Strand 5	D	28	43	anti-parallel
Strand 6	D	155	159	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	190	200	anti-parallel
Strand 4	D	180	187	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	203	205	anti-parallel
Strand 3	D	173	175	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	120	126	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	114	117	anti-parallel
Strand 4	E	48	60	anti-parallel
Strand 5	E	28	43	anti-parallel
Strand 6	E	155	159	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	142	147	anti-parallel
Strand 3	E	190	200	anti-parallel
Strand 4	E	180	187	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	139	first strand
Strand 2	E	203	205	anti-parallel
Strand 3	E	173	175	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	118	123	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	32	38	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	118	123	parallel
Strand 3	G	92	100	anti-parallel
Strand 4	G	32	38	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	118	123	parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	32	38	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	118	123	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	32	38	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	13	first strand
Strand 2	J	118	123	parallel
Strand 3	J	92	100	anti-parallel
Strand 4	J	32	38	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CI1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI1