Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CI5 entry

There are 2 chains in PDB entry 8CI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 225VAL 1602
C
 A 2 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8CI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 252Right-handed alpha
Helix 2
AA2
A
263 277Right-handed alpha
Helix 3
AA3
A
278 282Right-handed 310
Helix 4
AA4
A
306 322Right-handed alpha
Helix 5
AA5
A
328 343Right-handed alpha
Helix 6
AA6
A
345 353Right-handed alpha
Helix 7
AA7
A
374 378Right-handed 310
Helix 8
AA8
A
379 388Right-handed alpha
Helix 9
AA9
A
410 426Right-handed alpha
Helix 10
AB1
A
451 464Right-handed alpha
Helix 11
AB2
A
464 469Right-handed alpha
Helix 12
AB3
A
471 491Right-handed alpha
Helix 13
AB4
A
564 573Right-handed alpha
Helix 14
AB5
A
573 594Right-handed alpha
Helix 15
AB6
A
598 616Right-handed alpha
Helix 16
AB7
A
617 635Right-handed alpha
Helix 17
AB8
A
640 649Right-handed alpha
Helix 18
AB9
A
655 675Right-handed alpha
Helix 19
AC1
A
713 727Right-handed alpha
Helix 20
AC2
A
734 739Right-handed alpha
Helix 21
AC3
A
742 761Right-handed alpha
Helix 22
AC4
A
761 768Right-handed alpha
Helix 23
AC5
A
770 777Right-handed alpha
Helix 24
AC6
A
787 803Right-handed alpha
Helix 25
AC7
A
805 815Right-handed alpha
Helix 26
AC8
A
826 830Right-handed 310
Helix 27
AC9
A
848 861Right-handed alpha
Helix 28
AD1
A
865 873Right-handed alpha
Helix 29
AD2
A
899 918Right-handed alpha
Helix 30
AD3
A
932 947Right-handed alpha
Helix 31
AD4
A
984 992Right-handed alpha
Helix 32
AD5
A
1002 1011Right-handed alpha
Helix 33
AD6
A
1021 1030Right-handed alpha
Helix 34
AD7
A
1036 1045Right-handed alpha
Helix 35
AD8
A
1062 1083Right-handed alpha
Helix 36
AD9
A
1115 1127Right-handed alpha
Helix 37
AE1
A
1129 1135Right-handed 310
Helix 38
AE2
A
1139 1154Right-handed alpha
Helix 39
AE3
A
1186 1192Right-handed alpha
Helix 40
AE4
A
1201 1219Right-handed alpha
Helix 41
AE5
A
1222 1242Right-handed alpha
Helix 42
AE6
A
1250 1254Right-handed 310
Helix 43
AE7
A
1283 1301Right-handed alpha
Helix 44
AE8
A
1303 1318Right-handed alpha
Helix 45
AE9
A
1355 1366Right-handed alpha
Helix 46
AF1
A
1367 1371Right-handed 310
Helix 47
AF2
A
1376 1390Right-handed alpha
Helix 48
AF3
A
1390 1398Right-handed alpha
Helix 49
AF4
A
1401 1408Right-handed alpha
Helix 50
AF5
A
1427 1440Right-handed alpha
Helix 51
AF6
A
1449 1456Right-handed alpha
Helix 52
AF7
A
1504 1513Right-handed alpha
Helix 53
AF8
A
1515 1525Right-handed alpha
Helix 54
AF9
A
1531 1547Right-handed alpha
Helix 55
AG1
A
1553 1558Right-handed alpha
Helix 56
AG2
A
1560 1567Right-handed alpha
Helix 57
AG3
A
1582 1593Right-handed alpha
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There are 12 sheets in PDB entry 8CI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
638 639anti-parallel
Strand 3
A
1164 1166anti-parallel
Strand 4
A
968 972anti-parallel
Strand 5
A
1101 1106anti-parallel
Strand 6
A
1091 1093anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
404 405parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
536 538anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 504first strand
Strand 2
A
509 513anti-parallel
Strand 3
A
526 533anti-parallel
Strand 4
A
553 558anti-parallel
Strand 5
A
544 550anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 504first strand
Strand 2
A
509 513anti-parallel
Strand 3
A
526 533anti-parallel
Strand 4
A
561 563anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 703first strand
Strand 2
A
710 711anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 898first strand
Strand 2
A
879 882anti-parallel
Strand 3
A
1015 1019parallel
Strand 4
A
1050 1054anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
952 954first strand
Strand 2
A
960 962anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 965first strand
Strand 2
A
1108 1109anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1170 1172first strand
Strand 2
A
1175 1177anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1418 1420first strand
Strand 2
A
1423 1425anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1491first strand
Strand 2
A
1571 1576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il