Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CI8 entry

There are 25 chains in PDB entry 8CI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 317	GLN 326
B	GLY 299	GLN 323
C	GLY 299	ALA 324
D	GLY 299	ALA 324
E	PHE 300	GLY 309
F	GLY 317	GLN 326
G	GLY 299	GLN 323
H	GLY 299	ALA 324
I	GLY 299	ALA 324
J	PHE 300	GLY 309
K	GLY 317	GLN 326
L	GLY 299	GLN 323
M	GLY 299	ALA 324
N	GLY 299	ALA 324
O	PHE 300	GLY 309
P	GLY 317	GLN 326
Q	GLY 299	GLN 323
R	GLY 299	ALA 324
S	GLY 299	ALA 324
T	PHE 300	GLY 309
U	GLY 317	GLN 326
V	GLY 299	GLN 323
W	GLY 299	ALA 324
X	GLY 299	ALA 324
Y	PHE 300	GLY 309

There are no helices in PDB entry 8CI8

There are 14 sheets in PDB entry 8CI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	F	318	319	parallel
Strand 3	K	318	319	parallel
Strand 4	P	318	319	parallel
Strand 5	U	318	319	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	F	322	325	parallel
Strand 3	K	322	325	parallel
Strand 4	P	322	325	parallel
Strand 5	U	322	325	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	G	306	309	parallel
Strand 3	L	306	309	parallel
Strand 4	Q	306	309	parallel
Strand 5	V	306	309	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	322	first strand
Strand 2	G	312	322	parallel
Strand 3	L	312	322	parallel
Strand 4	Q	312	322	parallel
Strand 5	V	312	322	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	H	300	301	parallel
Strand 3	M	300	301	parallel
Strand 4	R	300	301	parallel
Strand 5	W	300	301	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	309	first strand
Strand 2	H	304	309	parallel
Strand 3	M	304	309	parallel
Strand 4	R	304	309	parallel
Strand 5	W	304	309	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	H	312	313	parallel
Strand 3	M	312	313	parallel
Strand 4	R	312	313	parallel
Strand 5	W	312	313	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	319	first strand
Strand 2	H	316	319	parallel
Strand 3	M	316	319	parallel
Strand 4	R	316	319	parallel
Strand 5	W	316	319	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	323	first strand
Strand 2	H	322	323	parallel
Strand 3	M	322	323	parallel
Strand 4	R	322	323	parallel
Strand 5	W	322	323	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	I	301	302	parallel
Strand 3	N	301	302	parallel
Strand 4	S	301	302	parallel
Strand 5	X	301	302	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	I	308	309	parallel
Strand 3	N	308	309	parallel
Strand 4	S	308	309	parallel
Strand 5	X	308	309	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	315	first strand
Strand 2	I	312	315	parallel
Strand 3	N	312	315	parallel
Strand 4	S	312	315	parallel
Strand 5	X	312	315	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	321	first strand
Strand 2	I	318	321	parallel
Strand 3	N	318	323	parallel
Strand 4	S	318	323	parallel
Strand 5	X	318	323	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	302	first strand
Strand 2	J	301	302	parallel
Strand 3	O	301	302	parallel
Strand 4	T	301	302	parallel
Strand 5	Y	301	302	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI8