Analysis of interatomic Contacts of Structural Units in PDB entry:
8CI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CI9 entry

There is 1 chain in PDB entry 8CI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LEU 7GLU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8CI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
23 40Right-handed alpha
Helix 2
AA2
C
51 67Right-handed alpha
Helix 3
AA3
C
69 75Right-handed alpha
Helix 4
AA4
C
102 114Right-handed alpha
Helix 5
AA5
C
118 147Right-handed alpha
Helix 6
AA6
C
148 151Right-handed 310
Helix 7
AA7
C
152 158Right-handed alpha
Helix 8
AA8
C
223 230Right-handed alpha
Helix 9
AA9
C
265 269Right-handed 310
Helix 10
AB1
C
282 290Right-handed alpha
Helix 11
AB2
C
294 298Right-handed 310
Helix 12
AB3
C
300 304Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8CI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
42 46parallel
Strand 3
C
218 222anti-parallel
Strand 4
C
190 194anti-parallel
Strand 5
C
249 257anti-parallel
Strand 6
C
161 169anti-parallel
Strand 7
C
92 98anti-parallel
Strand 8
C
86 88anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 184first strand
Strand 2
C
239 243anti-parallel
Strand 3
C
201 204anti-parallel
Strand 4
C
210 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
280 281anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il