Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CIB entry

There are 6 chains in PDB entry 8CIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 14	LEU 209
B	PRO 13	LEU 209
C	HIS 14	LEU 209
D	HIS 14	LEU 209
E	PRO 13	LEU 209
F	HIS 14	LEU 209

There are 64 helices in PDB entry 8CIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	43	48	Right-handed alpha
Helix 4	AA4	A	54	73	Right-handed alpha
Helix 5	AA5	A	93	97	Right-handed 310
Helix 6	AA6	A	99	103	Right-handed 310
Helix 7	AA7	A	123	132	Right-handed alpha
Helix 8	AA8	A	145	157	Right-handed alpha
Helix 9	AA9	A	176	178	Right-handed 310
Helix 10	AB1	A	182	198	Right-handed alpha
Helix 11	AB2	A	204	209	Right-handed 310
Helix 12	AB3	B	17	23	Right-handed alpha
Helix 13	AB4	B	30	34	Right-handed 310
Helix 14	AB5	B	43	48	Right-handed alpha
Helix 15	AB6	B	54	73	Right-handed alpha
Helix 16	AB7	B	93	97	Right-handed 310
Helix 17	AB8	B	99	103	Right-handed 310
Helix 18	AB9	B	123	132	Right-handed alpha
Helix 19	AC1	B	145	157	Right-handed alpha
Helix 20	AC2	B	182	198	Right-handed alpha
Helix 21	AC3	B	204	209	Right-handed 310
Helix 22	AC4	C	17	22	Right-handed alpha
Helix 23	AC5	C	30	34	Right-handed 310
Helix 24	AC6	C	43	48	Right-handed alpha
Helix 25	AC7	C	54	72	Right-handed alpha
Helix 26	AC8	C	93	97	Right-handed 310
Helix 27	AC9	C	99	103	Right-handed 310
Helix 28	AD1	C	123	132	Right-handed alpha
Helix 29	AD2	C	145	157	Right-handed alpha
Helix 30	AD3	C	176	178	Right-handed 310
Helix 31	AD4	C	182	198	Right-handed alpha
Helix 32	AD5	C	204	209	Right-handed 310
Helix 33	AD6	D	17	22	Right-handed alpha
Helix 34	AD7	D	30	32	Right-handed 310
Helix 35	AD8	D	43	48	Right-handed alpha
Helix 36	AD9	D	54	72	Right-handed alpha
Helix 37	AE1	D	93	97	Right-handed 310
Helix 38	AE2	D	99	103	Right-handed 310
Helix 39	AE3	D	123	132	Right-handed alpha
Helix 40	AE4	D	145	157	Right-handed alpha
Helix 41	AE5	D	176	178	Right-handed 310
Helix 42	AE6	D	182	198	Right-handed alpha
Helix 43	AE7	D	204	209	Right-handed 310
Helix 44	AE8	E	17	22	Right-handed alpha
Helix 45	AE9	E	30	32	Right-handed 310
Helix 46	AF1	E	43	48	Right-handed alpha
Helix 47	AF2	E	54	73	Right-handed alpha
Helix 48	AF3	E	93	97	Right-handed 310
Helix 49	AF4	E	99	103	Right-handed 310
Helix 50	AF5	E	123	132	Right-handed alpha
Helix 51	AF6	E	145	157	Right-handed alpha
Helix 52	AF7	E	182	198	Right-handed alpha
Helix 53	AF8	E	204	209	Right-handed 310
Helix 54	AF9	F	17	22	Right-handed alpha
Helix 55	AG1	F	30	34	Right-handed 310
Helix 56	AG2	F	43	48	Right-handed alpha
Helix 57	AG3	F	54	72	Right-handed alpha
Helix 58	AG4	F	93	97	Right-handed 310
Helix 59	AG5	F	99	103	Right-handed 310
Helix 60	AG6	F	123	132	Right-handed alpha
Helix 61	AG7	F	145	157	Right-handed alpha
Helix 62	AG8	F	176	178	Right-handed 310
Helix 63	AG9	F	182	198	Right-handed alpha
Helix 64	AH1	F	204	209	Right-handed 310

There are 18 sheets in PDB entry 8CIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	113	first strand
Strand 2	A	76	81	parallel
Strand 3	A	35	39	parallel
Strand 4	A	135	141	parallel
Strand 5	A	168	169	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	113	first strand
Strand 2	A	76	81	parallel
Strand 3	A	35	39	parallel
Strand 4	A	135	141	parallel
Strand 5	A	160	164	parallel
Strand 6	A	200	202	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	180	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	113	first strand
Strand 2	B	76	81	parallel
Strand 3	B	35	39	parallel
Strand 4	B	135	141	parallel
Strand 5	B	168	169	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	113	first strand
Strand 2	B	76	81	parallel
Strand 3	B	35	39	parallel
Strand 4	B	135	141	parallel
Strand 5	B	160	164	parallel
Strand 6	B	200	202	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	180	181	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	76	81	parallel
Strand 3	C	35	39	parallel
Strand 4	C	135	141	parallel
Strand 5	C	168	169	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	76	81	parallel
Strand 3	C	35	39	parallel
Strand 4	C	135	141	parallel
Strand 5	C	160	164	parallel
Strand 6	C	200	202	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	180	181	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	113	first strand
Strand 2	D	76	81	parallel
Strand 3	D	34	39	parallel
Strand 4	D	135	141	parallel
Strand 5	D	168	169	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	113	first strand
Strand 2	D	76	81	parallel
Strand 3	D	34	39	parallel
Strand 4	D	135	141	parallel
Strand 5	D	160	164	parallel
Strand 6	D	200	202	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	180	181	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	113	first strand
Strand 2	E	76	81	parallel
Strand 3	E	34	39	parallel
Strand 4	E	135	141	parallel
Strand 5	E	168	169	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	113	first strand
Strand 2	E	76	81	parallel
Strand 3	E	34	39	parallel
Strand 4	E	135	141	parallel
Strand 5	E	160	164	parallel
Strand 6	E	200	202	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	174	first strand
Strand 2	E	180	181	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	113	first strand
Strand 2	F	76	81	parallel
Strand 3	F	35	39	parallel
Strand 4	F	135	141	parallel
Strand 5	F	168	169	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	113	first strand
Strand 2	F	76	81	parallel
Strand 3	F	35	39	parallel
Strand 4	F	135	141	parallel
Strand 5	F	160	164	parallel
Strand 6	F	200	202	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	175	first strand
Strand 2	F	179	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIB