Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CIE entry

There is 1 chain in PDB entry 8CIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 13LEU 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8CIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 67Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
108 129Right-handed alpha
Helix 4
AA4
A
137 139Right-handed 310
Helix 5
AA5
A
171 176Right-handed alpha
Helix 6
AA6
A
179 185Right-handed alpha
Helix 7
AA7
A
189 207Right-handed alpha
Helix 8
AA8
A
215 228Right-handed alpha
Helix 9
AA9
A
231 239Right-handed alpha
Helix 10
AB1
A
240 245Right-handed 310
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
A
267 278Right-handed alpha
Helix 13
AB4
A
281 285Right-handed 310
Helix 14
AB5
A
287 293Right-handed alpha
Helix 15
AB6
A
294 298Right-handed 310
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There are 3 sheets in PDB entry 8CIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
75 78anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
149 151anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il