Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CIL entry

There are 2 chains in PDB entry 8CIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3LYS 374
B
 SER 4HIS 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8CIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
19 44Right-handed alpha
Helix 3
AA3
A
45 68Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
97 113Right-handed alpha
Helix 6
AA6
A
119 131Right-handed alpha
Helix 7
AA7
A
170 188Right-handed alpha
Helix 8
AA8
A
191 207Right-handed alpha
Helix 9
AA9
A
212 230Right-handed alpha
Helix 10
AB1
A
237 245Right-handed alpha
Helix 11
AB2
A
245 254Right-handed alpha
Helix 12
AB3
A
263 298Right-handed alpha
Helix 13
AB4
A
304 316Right-handed alpha
Helix 14
AB5
A
327 336Right-handed alpha
Helix 15
AB6
A
338 352Right-handed alpha
Helix 16
AB7
B
6 10Right-handed 310
Helix 17
AB8
B
19 44Right-handed alpha
Helix 18
AB9
B
45 68Right-handed alpha
Helix 19
AC1
B
73 86Right-handed alpha
Helix 20
AC2
B
97 113Right-handed alpha
Helix 21
AC3
B
119 131Right-handed alpha
Helix 22
AC4
B
170 186Right-handed alpha
Helix 23
AC5
B
191 207Right-handed alpha
Helix 24
AC6
B
212 230Right-handed alpha
Helix 25
AC7
B
237 245Right-handed alpha
Helix 26
AC8
B
245 258Right-handed alpha
Helix 27
AC9
B
263 299Right-handed alpha
Helix 28
AD1
B
304 317Right-handed alpha
Helix 29
AD2
B
327 336Right-handed alpha
Helix 30
AD3
B
338 352Right-handed alpha
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There are 4 sheets in PDB entry 8CIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
367 369anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
139 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
367 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il