Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CIP entry

There is 1 chain in PDB entry 8CIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LYS 668

There are133 helices in PDB entry 8CIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	25	Right-handed alpha
Helix 2	AA2	A	29	46	Right-handed alpha
Helix 3	AA3	A	66	68	Right-handed 310
Helix 4	AA4	A	69	81	Right-handed alpha
Helix 5	AA5	A	85	90	Right-handed alpha
Helix 6	AA6	A	119	140	Right-handed alpha
Helix 7	AA7	A	156	162	Right-handed alpha
Helix 8	AA8	A	162	175	Right-handed alpha
Helix 9	AA9	A	196	198	Right-handed 310
Helix 10	AB1	A	202	211	Right-handed alpha
Helix 11	AB2	A	222	236	Right-handed alpha
Helix 12	AB3	A	259	263	Right-handed 310
Helix 13	AB4	A	268	280	Right-handed alpha
Helix 14	AB5	A	290	301	Right-handed alpha
Helix 15	AB6	A	301	323	Right-handed alpha
Helix 16	AB7	A	323	335	Right-handed alpha
Helix 17	AB8	A	341	346	Right-handed 310
Helix 18	AB9	A	357	372	Right-handed alpha
Helix 19	AC1	A	382	387	Right-handed alpha
Helix 20	AC2	A	411	426	Right-handed alpha
Helix 21	AC3	A	437	441	Right-handed 310
Helix 22	AC4	A	442	453	Right-handed alpha
Helix 23	AC5	A	464	468	Right-handed 310
Helix 24	AC6	A	471	475	Right-handed 310
Helix 25	AC7	A	478	485	Right-handed alpha
Helix 26	AC8	A	496	510	Right-handed alpha
Helix 27	AC9	A	529	540	Right-handed alpha
Helix 28	AD1	A	562	576	Right-handed alpha
Helix 29	AD2	A	588	594	Right-handed alpha
Helix 30	AD3	A	596	604	Right-handed alpha
Helix 31	AD4	A	622	627	Right-handed alpha
Helix 32	AD5	A	643	651	Right-handed alpha
Helix 33	AD6	A	654	666	Right-handed alpha
Helix 34	AD7	B	5	25	Right-handed alpha
Helix 35	AD8	B	29	46	Right-handed alpha
Helix 36	AD9	B	66	68	Right-handed 310
Helix 37	AE1	B	69	81	Right-handed alpha
Helix 38	AE2	B	85	90	Right-handed alpha
Helix 39	AE3	B	119	140	Right-handed alpha
Helix 40	AE4	B	156	162	Right-handed alpha
Helix 41	AE5	B	162	175	Right-handed alpha
Helix 42	AE6	B	194	198	Right-handed 310
Helix 43	AE7	B	202	210	Right-handed alpha
Helix 44	AE8	B	222	236	Right-handed alpha
Helix 45	AE9	B	259	263	Right-handed 310
Helix 46	AF1	B	268	279	Right-handed alpha
Helix 47	AF2	B	290	301	Right-handed alpha
Helix 48	AF3	B	301	323	Right-handed alpha
Helix 49	AF4	B	323	336	Right-handed alpha
Helix 50	AF5	B	341	346	Right-handed 310
Helix 51	AF6	B	356	372	Right-handed alpha
Helix 52	AF7	B	382	387	Right-handed alpha
Helix 53	AF8	B	411	426	Right-handed alpha
Helix 54	AF9	B	437	441	Right-handed 310
Helix 55	AG1	B	442	453	Right-handed alpha
Helix 56	AG2	B	464	468	Right-handed 310
Helix 57	AG3	B	471	475	Right-handed 310
Helix 58	AG4	B	478	485	Right-handed alpha
Helix 59	AG5	B	496	510	Right-handed alpha
Helix 60	AG6	B	529	540	Right-handed alpha
Helix 61	AG7	B	562	577	Right-handed alpha
Helix 62	AG8	B	588	595	Right-handed alpha
Helix 63	AG9	B	596	604	Right-handed alpha
Helix 64	AH1	B	622	627	Right-handed alpha
Helix 65	AH2	B	643	651	Right-handed alpha
Helix 66	AH3	B	654	666	Right-handed alpha
Helix 67	AH4	C	5	25	Right-handed alpha
Helix 68	AH5	C	29	46	Right-handed alpha
Helix 69	AH6	C	66	68	Right-handed 310
Helix 70	AH7	C	69	81	Right-handed alpha
Helix 71	AH8	C	85	90	Right-handed alpha
Helix 72	AH9	C	119	140	Right-handed alpha
Helix 73	AI1	C	156	162	Right-handed alpha
Helix 74	AI2	C	162	176	Right-handed alpha
Helix 75	AI3	C	194	198	Right-handed 310
Helix 76	AI4	C	202	210	Right-handed alpha
Helix 77	AI5	C	222	236	Right-handed alpha
Helix 78	AI6	C	259	263	Right-handed 310
Helix 79	AI7	C	268	279	Right-handed alpha
Helix 80	AI8	C	290	301	Right-handed alpha
Helix 81	AI9	C	301	323	Right-handed alpha
Helix 82	AJ1	C	323	336	Right-handed alpha
Helix 83	AJ2	C	341	346	Right-handed 310
Helix 84	AJ3	C	357	372	Right-handed alpha
Helix 85	AJ4	C	382	387	Right-handed alpha
Helix 86	AJ5	C	397	401	Right-handed 310
Helix 87	AJ6	C	411	426	Right-handed alpha
Helix 88	AJ7	C	437	441	Right-handed 310
Helix 89	AJ8	C	442	453	Right-handed alpha
Helix 90	AJ9	C	464	468	Right-handed 310
Helix 91	AK1	C	471	475	Right-handed 310
Helix 92	AK2	C	478	485	Right-handed alpha
Helix 93	AK3	C	496	510	Right-handed alpha
Helix 94	AK4	C	529	540	Right-handed alpha
Helix 95	AK5	C	562	576	Right-handed alpha
Helix 96	AK6	C	588	594	Right-handed alpha
Helix 97	AK7	C	596	604	Right-handed alpha
Helix 98	AK8	C	622	627	Right-handed alpha
Helix 99	AK9	C	643	651	Right-handed alpha
Helix 100	AL1	C	654	666	Right-handed alpha
Helix 101	AL2	D	5	25	Right-handed alpha
Helix 102	AL3	D	29	46	Right-handed alpha
Helix 103	AL4	D	66	68	Right-handed 310
Helix 104	AL5	D	69	80	Right-handed alpha
Helix 105	AL6	D	85	90	Right-handed alpha
Helix 106	AL7	D	119	140	Right-handed alpha
Helix 107	AL8	D	156	162	Right-handed alpha
Helix 108	AL9	D	162	175	Right-handed alpha
Helix 109	AM1	D	196	198	Right-handed 310
Helix 110	AM2	D	202	211	Right-handed alpha
Helix 111	AM3	D	222	236	Right-handed alpha
Helix 112	AM4	D	259	263	Right-handed 310
Helix 113	AM5	D	268	280	Right-handed alpha
Helix 114	AM6	D	290	301	Right-handed alpha
Helix 115	AM7	D	301	323	Right-handed alpha
Helix 116	AM8	D	323	335	Right-handed alpha
Helix 117	AM9	D	341	346	Right-handed 310
Helix 118	AN1	D	356	372	Right-handed alpha
Helix 119	AN2	D	382	387	Right-handed alpha
Helix 120	AN3	D	411	426	Right-handed alpha
Helix 121	AN4	D	437	441	Right-handed 310
Helix 122	AN5	D	442	453	Right-handed alpha
Helix 123	AN6	D	464	468	Right-handed 310
Helix 124	AN7	D	471	475	Right-handed 310
Helix 125	AN8	D	478	485	Right-handed alpha
Helix 126	AN9	D	496	510	Right-handed alpha
Helix 127	AO1	D	529	540	Right-handed alpha
Helix 128	AO2	D	561	577	Right-handed alpha
Helix 129	AO3	D	588	594	Right-handed alpha
Helix 130	AO4	D	596	604	Right-handed alpha
Helix 131	AO5	D	622	627	Right-handed alpha
Helix 132	AO6	D	643	651	Right-handed alpha
Helix 133	AO7	D	654	667	Right-handed alpha

There are 18 sheets in PDB entry 8CIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	151	155	parallel
Strand 3	A	180	186	parallel
Strand 4	A	241	246	parallel
Strand 5	A	213	217	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	523	525	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	375	379	parallel
Strand 3	A	429	435	parallel
Strand 4	A	457	461	parallel
Strand 5	A	515	518	parallel
Strand 6	A	490	492	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	546	first strand
Strand 2	A	581	585	anti-parallel
Strand 3	A	555	559	parallel
Strand 4	A	611	614	parallel
Strand 5	A	631	633	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	151	155	parallel
Strand 3	B	180	186	parallel
Strand 4	B	241	246	parallel
Strand 5	B	213	217	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	524	525	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	375	379	parallel
Strand 3	B	429	435	parallel
Strand 4	B	457	461	parallel
Strand 5	B	515	518	parallel
Strand 6	B	490	492	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	546	first strand
Strand 2	B	581	585	anti-parallel
Strand 3	B	555	559	parallel
Strand 4	B	611	614	parallel
Strand 5	B	631	633	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	151	155	parallel
Strand 3	C	180	186	parallel
Strand 4	C	241	246	parallel
Strand 5	C	213	217	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	523	525	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	407	first strand
Strand 2	C	375	379	parallel
Strand 3	C	429	435	parallel
Strand 4	C	457	461	parallel
Strand 5	C	515	518	parallel
Strand 6	C	490	492	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	543	546	first strand
Strand 2	C	581	585	anti-parallel
Strand 3	C	555	559	parallel
Strand 4	C	611	614	parallel
Strand 5	C	631	633	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	151	155	parallel
Strand 3	D	180	186	parallel
Strand 4	D	241	246	parallel
Strand 5	D	213	217	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	193	194	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	524	525	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	375	379	parallel
Strand 3	D	429	435	parallel
Strand 4	D	457	461	parallel
Strand 5	D	515	518	parallel
Strand 6	D	490	492	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	546	first strand
Strand 2	D	581	585	anti-parallel
Strand 3	D	555	559	parallel
Strand 4	D	611	614	parallel
Strand 5	D	631	633	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIP