Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CIW entry

There are 2 chains in PDB entry 8CIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 555
B
 MET 1ALA 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 8CIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 32Right-handed alpha
Helix 2
AA2
A
39 46Right-handed alpha
Helix 3
AA3
A
46 69Right-handed alpha
Helix 4
AA4
A
75 105Right-handed alpha
Helix 5
AA5
A
108 116Right-handed alpha
Helix 6
AA6
A
117 127Right-handed alpha
Helix 7
AA7
A
129 143Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
153 170Right-handed alpha
Helix 10
AB1
A
171 182Right-handed alpha
Helix 11
AB2
A
186 196Right-handed alpha
Helix 12
AB3
A
204 208Right-handed 310
Helix 13
AB4
A
218 232Right-handed alpha
Helix 14
AB5
A
236 239Right-handed 310
Helix 15
AB6
A
240 254Right-handed alpha
Helix 16
AB7
A
255 268Right-handed alpha
Helix 17
AB8
A
285 289Right-handed 310
Helix 18
AB9
A
327 333Right-handed 310
Helix 19
AC1
A
388 390Right-handed 310
Helix 20
AC2
A
392 397Right-handed 310
Helix 21
AC3
A
399 437Right-handed alpha
Helix 22
AC4
A
447 477Right-handed alpha
Helix 23
AC5
A
480 507Right-handed alpha
Helix 24
AC6
A
508 512Right-handed 310
Helix 25
AC7
A
515 525Right-handed alpha
Helix 26
AC8
A
533 541Right-handed alpha
Helix 27
AC9
A
541 554Right-handed alpha
Helix 28
AD1
B
5 32Right-handed alpha
Helix 29
AD2
B
39 46Right-handed alpha
Helix 30
AD3
B
46 69Right-handed alpha
Helix 31
AD4
B
75 104Right-handed alpha
Helix 32
AD5
B
108 116Right-handed alpha
Helix 33
AD6
B
117 127Right-handed alpha
Helix 34
AD7
B
129 143Right-handed alpha
Helix 35
AD8
B
144 147Right-handed 310
Helix 36
AD9
B
153 170Right-handed alpha
Helix 37
AE1
B
171 181Right-handed alpha
Helix 38
AE2
B
186 196Right-handed alpha
Helix 39
AE3
B
204 208Right-handed 310
Helix 40
AE4
B
218 232Right-handed alpha
Helix 41
AE5
B
236 239Right-handed 310
Helix 42
AE6
B
240 254Right-handed alpha
Helix 43
AE7
B
255 268Right-handed alpha
Helix 44
AE8
B
285 289Right-handed 310
Helix 45
AE9
B
327 333Right-handed 310
Helix 46
AF1
B
388 390Right-handed 310
Helix 47
AF2
B
392 397Right-handed 310
Helix 48
AF3
B
399 437Right-handed alpha
Helix 49
AF4
B
447 477Right-handed alpha
Helix 50
AF5
B
480 507Right-handed alpha
Helix 51
AF6
B
508 512Right-handed 310
Helix 52
AF7
B
515 525Right-handed alpha
Helix 53
AF8
B
526 529Right-handed 310
Helix 54
AF9
B
533 541Right-handed alpha
Helix 55
AG1
B
541 554Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8CIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
37 38anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
317 323parallel
Strand 3
A
335 341anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 296first strand
Strand 2
A
299 310anti-parallel
Strand 3
A
375 386anti-parallel
Strand 4
A
359 364anti-parallel
Strand 5
A
349 353anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
442 443anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
37 38anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
317 323parallel
Strand 3
B
335 341anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 296first strand
Strand 2
B
299 310anti-parallel
Strand 3
B
375 386anti-parallel
Strand 4
B
359 364anti-parallel
Strand 5
B
349 353anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 439first strand
Strand 2
B
442 443anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il