Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CIX entry

There are 5 chains in PDB entry 8CIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 366
B
 LEU 5LEU 5
B
 LEU 7LEU 7
B
 PRO 9PRO 9
B
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8CIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
112 116Right-handed 310
Helix 5
AA5
A
131 143Right-handed alpha
Helix 6
AA6
A
144 146Right-handed 310
Helix 7
AA7
A
152 157Right-handed 310
Helix 8
AA8
A
196 207Right-handed alpha
Helix 9
AA9
A
243 247Right-handed 310
Helix 10
AB1
A
260 272Right-handed alpha
Helix 11
AB2
A
321 331Right-handed alpha
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There are 4 sheets in PDB entry 8CIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
104 109anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
230 235anti-parallel
Strand 6
A
222 227anti-parallel
Strand 7
A
214 219anti-parallel
Strand 8
A
124 130anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
347 351anti-parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
176 195anti-parallel
Strand 6
A
158 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
289 295anti-parallel
Strand 3
A
280 286anti-parallel
Strand 4
A
315 320anti-parallel
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