Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CIZ entry

There are 2 chains in PDB entry 8CIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	LEU 366
B	GLY -1	ARG 279

There are 23 helices in PDB entry 8CIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	18	Right-handed alpha
Helix 2	AA2	A	28	30	Right-handed 310
Helix 3	AA3	A	72	82	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	131	141	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	152	156	Right-handed 310
Helix 8	AA8	A	196	207	Right-handed alpha
Helix 9	AA9	A	243	247	Right-handed 310
Helix 10	AB1	A	260	271	Right-handed alpha
Helix 11	AB2	A	272	274	Right-handed 310
Helix 12	AB3	A	321	332	Right-handed alpha
Helix 13	AB4	B	7	18	Right-handed alpha
Helix 14	AB5	B	28	30	Right-handed 310
Helix 15	AB6	B	72	82	Right-handed alpha
Helix 16	AB7	B	112	116	Right-handed 310
Helix 17	AB8	B	132	141	Right-handed alpha
Helix 18	AB9	B	142	146	Right-handed 310
Helix 19	AC1	B	152	157	Right-handed 310
Helix 20	AC2	B	196	206	Right-handed alpha
Helix 21	AC3	B	243	247	Right-handed 310
Helix 22	AC4	B	260	272	Right-handed alpha
Helix 23	AC5	B	321	332	Right-handed alpha

There are 6 sheets in PDB entry 8CIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	B	301	307	anti-parallel
Strand 6	B	289	295	anti-parallel
Strand 7	B	280	286	anti-parallel
Strand 8	B	315	320	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	230	235	anti-parallel
Strand 6	A	222	227	anti-parallel
Strand 7	A	214	218	anti-parallel
Strand 8	A	126	130	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	335	340	anti-parallel
Strand 3	A	347	351	anti-parallel
Strand 4	A	354	361	anti-parallel
Strand 5	A	176	195	anti-parallel
Strand 6	A	158	172	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	320	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	289	295	anti-parallel
Strand 4	A	301	307	anti-parallel
Strand 5	B	104	109	anti-parallel
Strand 6	B	96	101	anti-parallel
Strand 7	B	87	92	anti-parallel
Strand 8	B	2	6	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	32	37	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	230	235	anti-parallel
Strand 6	B	222	227	anti-parallel
Strand 7	B	213	219	anti-parallel
Strand 8	B	124	131	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	259	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	347	351	anti-parallel
Strand 4	B	354	361	anti-parallel
Strand 5	B	176	195	anti-parallel
Strand 6	B	158	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CIZ