Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CJ2 entry

There are 15 chains in PDB entry 8CJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 154
B	MET 1	GLU 154
C	MET 1	GLU 154
D	MET 1	GLU 154
E	GLU 1	LYS 2
E	ALA 4	ALA 4
E	ARG 8	ILE 9
F	GLU 1	LYS 2
F	ALA 4	ALA 4
F	ARG 8	ILE 9
G	GLU 1	LYS 2
G	ALA 4	ALA 4
G	ARG 8	ILE 9
H	ALA 4	ALA 4
H	ARG 8	ILE 9

There are 20 helices in PDB entry 8CJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	52	Right-handed 310
Helix 2	AA2	A	80	84	Right-handed 310
Helix 3	AA3	A	85	90	Right-handed alpha
Helix 4	AA4	A	119	125	Right-handed alpha
Helix 5	AA5	A	131	133	Right-handed 310
Helix 6	AA6	B	50	52	Right-handed 310
Helix 7	AA7	B	80	84	Right-handed 310
Helix 8	AA8	B	85	89	Right-handed 310
Helix 9	AA9	B	119	125	Right-handed alpha
Helix 10	AB1	B	131	133	Right-handed 310
Helix 11	AB2	C	50	52	Right-handed 310
Helix 12	AB3	C	80	84	Right-handed 310
Helix 13	AB4	C	85	90	Right-handed alpha
Helix 14	AB5	C	119	125	Right-handed alpha
Helix 15	AB6	C	131	133	Right-handed 310
Helix 16	AB7	D	50	52	Right-handed 310
Helix 17	AB8	D	80	84	Right-handed 310
Helix 18	AB9	D	85	90	Right-handed alpha
Helix 19	AC1	D	119	125	Right-handed alpha
Helix 20	AC2	D	131	133	Right-handed 310

There are 11 sheets in PDB entry 8CJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	22	30	anti-parallel
Strand 3	A	68	76	anti-parallel
Strand 4	C	68	76	parallel
Strand 5	C	22	30	anti-parallel
Strand 6	C	4	11	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	91	101	anti-parallel
Strand 5	A	38	45	anti-parallel
Strand 6	A	54	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	104	117	anti-parallel
Strand 4	A	145	148	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	22	30	anti-parallel
Strand 3	B	68	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	104	117	anti-parallel
Strand 4	B	91	101	anti-parallel
Strand 5	B	38	45	anti-parallel
Strand 6	B	54	62	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	104	117	anti-parallel
Strand 4	B	145	148	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	104	117	anti-parallel
Strand 4	C	91	101	anti-parallel
Strand 5	C	38	45	anti-parallel
Strand 6	C	54	62	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	135	139	anti-parallel
Strand 3	C	104	117	anti-parallel
Strand 4	C	145	148	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	11	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	68	76	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	135	139	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	91	101	anti-parallel
Strand 5	D	38	45	anti-parallel
Strand 6	D	54	62	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	135	139	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	145	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJ2