Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CJ9 entry

There are 2 chains in PDB entry 8CJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	PRO 528
B	GLY 32	PRO 528

There are 44 helices in PDB entry 8CJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	44	Right-handed 310
Helix 2	AA2	A	49	56	Right-handed alpha
Helix 3	AA3	A	76	90	Right-handed alpha
Helix 4	AA4	A	120	123	Right-handed 310
Helix 5	AA5	A	147	157	Right-handed alpha
Helix 6	AA6	A	172	178	Right-handed alpha
Helix 7	AA7	A	185	190	Right-handed alpha
Helix 8	AA8	A	191	194	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	256	269	Right-handed alpha
Helix 11	AB2	A	286	292	Right-handed alpha
Helix 12	AB3	A	301	314	Right-handed alpha
Helix 13	AB4	A	336	347	Right-handed alpha
Helix 14	AB5	A	362	367	Right-handed alpha
Helix 15	AB6	A	367	379	Right-handed alpha
Helix 16	AB7	A	397	406	Right-handed alpha
Helix 17	AB8	A	427	429	Right-handed 310
Helix 18	AB9	A	458	460	Right-handed 310
Helix 19	AC1	A	461	479	Right-handed alpha
Helix 20	AC2	A	492	501	Right-handed alpha
Helix 21	AC3	A	503	515	Right-handed alpha
Helix 22	AC4	A	521	525	Right-handed 310
Helix 23	AC5	B	34	44	Right-handed 310
Helix 24	AC6	B	49	56	Right-handed alpha
Helix 25	AC7	B	76	90	Right-handed alpha
Helix 26	AC8	B	120	123	Right-handed 310
Helix 27	AC9	B	147	157	Right-handed alpha
Helix 28	AD1	B	172	178	Right-handed alpha
Helix 29	AD2	B	185	190	Right-handed alpha
Helix 30	AD3	B	191	194	Right-handed 310
Helix 31	AD4	B	216	224	Right-handed alpha
Helix 32	AD5	B	256	268	Right-handed alpha
Helix 33	AD6	B	286	292	Right-handed alpha
Helix 34	AD7	B	301	314	Right-handed alpha
Helix 35	AD8	B	336	347	Right-handed alpha
Helix 36	AD9	B	362	367	Right-handed alpha
Helix 37	AE1	B	367	379	Right-handed alpha
Helix 38	AE2	B	397	406	Right-handed alpha
Helix 39	AE3	B	427	429	Right-handed 310
Helix 40	AE4	B	458	460	Right-handed 310
Helix 41	AE5	B	461	480	Right-handed alpha
Helix 42	AE6	B	492	501	Right-handed alpha
Helix 43	AE7	B	503	515	Right-handed alpha
Helix 44	AE8	B	521	525	Right-handed 310

There are 8 sheets in PDB entry 8CJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	70	72	anti-parallel
Strand 3	A	115	118	parallel
Strand 4	A	96	99	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	231	242	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	231	242	anti-parallel
Strand 4	A	196	203	anti-parallel
Strand 5	A	208	212	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	361	first strand
Strand 2	A	246	254	anti-parallel
Strand 3	A	320	329	anti-parallel
Strand 4	A	279	285	anti-parallel
Strand 5	A	416	425	anti-parallel
Strand 6	A	446	455	anti-parallel
Strand 7	A	389	394	anti-parallel
Strand 8	A	484	485	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	70	72	anti-parallel
Strand 3	B	115	118	parallel
Strand 4	B	96	99	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	231	242	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	231	242	anti-parallel
Strand 4	B	196	203	anti-parallel
Strand 5	B	208	212	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	361	first strand
Strand 2	B	246	254	anti-parallel
Strand 3	B	320	329	anti-parallel
Strand 4	B	279	285	anti-parallel
Strand 5	B	416	425	anti-parallel
Strand 6	B	446	455	anti-parallel
Strand 7	B	389	394	anti-parallel
Strand 8	B	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJ9