Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CJD entry

There is 1 chain in PDB entry 8CJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8CJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
54 59Right-handed alpha
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
75 91Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
156 167Right-handed alpha
Helix 8
AA8
A
168 170Right-handed 310
Helix 9
AA9
A
197 200Right-handed 310
Helix 10
AB1
A
201 207Right-handed 310
Helix 11
AB2
A
208 217Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
235 238Right-handed 310
Helix 14
AB5
A
261 270Right-handed alpha
Helix 15
AB6
A
272 280Right-handed alpha
Helix 16
AB7
A
285 293Right-handed alpha
Helix 17
AB8
A
347 349Right-handed 310
Helix 18
AB9
A
375 393Right-handed alpha
Helix 19
AC1
A
393 402Right-handed alpha
Helix 20
AC2
A
403 416Right-handed alpha
Helix 21
AC3
A
429 442Right-handed alpha
Helix 22
AC4
A
446 450Right-handed 310
Helix 23
AC5
A
452 461Right-handed alpha
Helix 24
AC6
A
465 470Right-handed 310
Helix 25
AC7
A
479 491Right-handed alpha
Helix 26
AC8
A
494 504Right-handed alpha
Helix 27
AC9
A
508 517Right-handed alpha
Helix 28
AD1
A
526 532Right-handed 310
Helix 29
AD2
A
533 549Right-handed alpha
Helix 30
AD3
A
558 569Right-handed alpha
Helix 31
AD4
A
569 576Right-handed alpha
Helix 32
AD5
A
577 579Right-handed 310
Helix 33
AD6
A
585 601Right-handed alpha
Helix 34
AD7
A
630 641Right-handed alpha
Helix 35
AD8
A
649 653Right-handed 310
Helix 36
AD9
B
13 23Right-handed alpha
Helix 37
AE1
B
36 44Right-handed alpha
Helix 38
AE2
B
54 59Right-handed alpha
Helix 39
AE3
B
60 68Right-handed alpha
Helix 40
AE4
B
75 91Right-handed alpha
Helix 41
AE5
B
132 140Right-handed alpha
Helix 42
AE6
B
156 167Right-handed alpha
Helix 43
AE7
B
168 170Right-handed 310
Helix 44
AE8
B
197 200Right-handed 310
Helix 45
AE9
B
201 207Right-handed 310
Helix 46
AF1
B
208 217Right-handed alpha
Helix 47
AF2
B
229 234Right-handed alpha
Helix 48
AF3
B
235 238Right-handed 310
Helix 49
AF4
B
261 270Right-handed alpha
Helix 50
AF5
B
272 280Right-handed alpha
Helix 51
AF6
B
285 293Right-handed alpha
Helix 52
AF7
B
347 349Right-handed 310
Helix 53
AF8
B
353 355Right-handed 310
Helix 54
AF9
B
375 393Right-handed alpha
Helix 55
AG1
B
393 402Right-handed alpha
Helix 56
AG2
B
403 417Right-handed alpha
Helix 57
AG3
B
429 442Right-handed alpha
Helix 58
AG4
B
446 450Right-handed 310
Helix 59
AG5
B
452 461Right-handed alpha
Helix 60
AG6
B
465 470Right-handed 310
Helix 61
AG7
B
479 491Right-handed alpha
Helix 62
AG8
B
494 504Right-handed alpha
Helix 63
AG9
B
508 517Right-handed alpha
Helix 64
AH1
B
526 532Right-handed 310
Helix 65
AH2
B
533 548Right-handed alpha
Helix 66
AH3
B
558 569Right-handed alpha
Helix 67
AH4
B
569 576Right-handed alpha
Helix 68
AH5
B
577 579Right-handed 310
Helix 69
AH6
B
585 601Right-handed alpha
Helix 70
AH7
B
605 609Right-handed 310
Helix 71
AH8
B
630 641Right-handed alpha
Helix 72
AH9
B
649 653Right-handed 310
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There are 18 sheets in PDB entry 8CJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
27 31parallel
Strand 3
A
2 7parallel
Strand 4
A
118 126parallel
Strand 5
A
109 113anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
335 338parallel
Strand 8
A
342 343anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
27 31parallel
Strand 3
A
2 7parallel
Strand 4
A
118 126parallel
Strand 5
A
363 365parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
330 331anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 299first strand
Strand 2
A
172 177parallel
Strand 3
A
149 152parallel
Strand 4
A
322 324parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
257 259parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
192 195anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
310 313anti-parallel
Strand 3
A
316 319anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
356 357anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
427 428parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
27 31parallel
Strand 3
B
2 7parallel
Strand 4
B
118 126parallel
Strand 5
B
109 113anti-parallel
Strand 6
B
99 104anti-parallel
Strand 7
B
335 338parallel
Strand 8
B
342 343anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
27 31parallel
Strand 3
B
2 7parallel
Strand 4
B
118 126parallel
Strand 5
B
363 365parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
330 331anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 299first strand
Strand 2
B
172 177parallel
Strand 3
B
149 152parallel
Strand 4
B
322 324parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
257 259parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
192 195anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
310 313anti-parallel
Strand 3
B
316 319anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
356 357anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
427 428parallel
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