Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CJE entry

There are 2 chains in PDB entry 8CJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 655
B	MET 1	VAL 575

There are144 helices in PDB entry 8CJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	36	44	Right-handed alpha
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	60	68	Right-handed alpha
Helix 5	AA5	A	75	91	Right-handed alpha
Helix 6	AA6	A	132	140	Right-handed alpha
Helix 7	AA7	A	156	167	Right-handed alpha
Helix 8	AA8	A	168	170	Right-handed 310
Helix 9	AA9	A	197	200	Right-handed 310
Helix 10	AB1	A	201	207	Right-handed 310
Helix 11	AB2	A	208	217	Right-handed alpha
Helix 12	AB3	A	229	234	Right-handed alpha
Helix 13	AB4	A	235	238	Right-handed 310
Helix 14	AB5	A	261	270	Right-handed alpha
Helix 15	AB6	A	272	280	Right-handed alpha
Helix 16	AB7	A	285	292	Right-handed alpha
Helix 17	AB8	A	347	349	Right-handed 310
Helix 18	AB9	A	353	355	Right-handed 310
Helix 19	AC1	A	375	393	Right-handed alpha
Helix 20	AC2	A	393	402	Right-handed alpha
Helix 21	AC3	A	403	416	Right-handed alpha
Helix 22	AC4	A	429	442	Right-handed alpha
Helix 23	AC5	A	446	450	Right-handed 310
Helix 24	AC6	A	452	461	Right-handed alpha
Helix 25	AC7	A	465	470	Right-handed 310
Helix 26	AC8	A	479	491	Right-handed alpha
Helix 27	AC9	A	494	504	Right-handed alpha
Helix 28	AD1	A	508	517	Right-handed alpha
Helix 29	AD2	A	526	532	Right-handed 310
Helix 30	AD3	A	533	549	Right-handed alpha
Helix 31	AD4	A	558	569	Right-handed alpha
Helix 32	AD5	A	569	576	Right-handed alpha
Helix 33	AD6	A	577	579	Right-handed 310
Helix 34	AD7	A	585	601	Right-handed alpha
Helix 35	AD8	A	632	640	Right-handed alpha
Helix 36	AD9	A	641	643	Right-handed 310
Helix 37	AE1	A	649	653	Right-handed 310
Helix 38	AE2	B	13	23	Right-handed alpha
Helix 39	AE3	B	36	44	Right-handed alpha
Helix 40	AE4	B	54	59	Right-handed alpha
Helix 41	AE5	B	60	68	Right-handed alpha
Helix 42	AE6	B	75	91	Right-handed alpha
Helix 43	AE7	B	132	139	Right-handed alpha
Helix 44	AE8	B	156	167	Right-handed alpha
Helix 45	AE9	B	168	170	Right-handed 310
Helix 46	AF1	B	197	200	Right-handed 310
Helix 47	AF2	B	201	207	Right-handed 310
Helix 48	AF3	B	208	217	Right-handed alpha
Helix 49	AF4	B	229	234	Right-handed alpha
Helix 50	AF5	B	235	238	Right-handed 310
Helix 51	AF6	B	261	270	Right-handed alpha
Helix 52	AF7	B	272	280	Right-handed alpha
Helix 53	AF8	B	285	292	Right-handed alpha
Helix 54	AF9	B	347	349	Right-handed 310
Helix 55	AG1	B	375	393	Right-handed alpha
Helix 56	AG2	B	393	402	Right-handed alpha
Helix 57	AG3	B	403	417	Right-handed alpha
Helix 58	AG4	B	429	442	Right-handed alpha
Helix 59	AG5	B	446	450	Right-handed 310
Helix 60	AG6	B	452	461	Right-handed alpha
Helix 61	AG7	B	465	470	Right-handed 310
Helix 62	AG8	B	479	491	Right-handed alpha
Helix 63	AG9	B	494	504	Right-handed alpha
Helix 64	AH1	B	508	517	Right-handed alpha
Helix 65	AH2	B	526	532	Right-handed 310
Helix 66	AH3	B	533	549	Right-handed alpha
Helix 67	AH4	B	558	569	Right-handed alpha
Helix 68	AH5	B	569	576	Right-handed alpha
Helix 69	AH6	B	577	579	Right-handed 310
Helix 70	AH7	B	585	601	Right-handed alpha
Helix 71	AH8	B	633	641	Right-handed alpha
Helix 72	AH9	B	649	653	Right-handed 310
Helix 73	AI1	C	13	23	Right-handed alpha
Helix 74	AI2	C	36	44	Right-handed alpha
Helix 75	AI3	C	54	59	Right-handed alpha
Helix 76	AI4	C	60	68	Right-handed alpha
Helix 77	AI5	C	75	91	Right-handed alpha
Helix 78	AI6	C	132	140	Right-handed alpha
Helix 79	AI7	C	156	167	Right-handed alpha
Helix 80	AI8	C	168	170	Right-handed 310
Helix 81	AI9	C	197	200	Right-handed 310
Helix 82	AJ1	C	201	207	Right-handed 310
Helix 83	AJ2	C	208	217	Right-handed alpha
Helix 84	AJ3	C	229	234	Right-handed alpha
Helix 85	AJ4	C	235	238	Right-handed 310
Helix 86	AJ5	C	261	270	Right-handed alpha
Helix 87	AJ6	C	272	280	Right-handed alpha
Helix 88	AJ7	C	285	292	Right-handed alpha
Helix 89	AJ8	C	347	349	Right-handed 310
Helix 90	AJ9	C	353	355	Right-handed 310
Helix 91	AK1	C	376	393	Right-handed alpha
Helix 92	AK2	C	393	402	Right-handed alpha
Helix 93	AK3	C	403	416	Right-handed alpha
Helix 94	AK4	C	429	442	Right-handed alpha
Helix 95	AK5	C	446	450	Right-handed 310
Helix 96	AK6	C	452	461	Right-handed alpha
Helix 97	AK7	C	465	470	Right-handed 310
Helix 98	AK8	C	479	491	Right-handed alpha
Helix 99	AK9	C	494	504	Right-handed alpha
Helix 100	AL1	C	508	517	Right-handed alpha
Helix 101	AL2	C	526	532	Right-handed 310
Helix 102	AL3	C	533	549	Right-handed alpha
Helix 103	AL4	C	558	569	Right-handed alpha
Helix 104	AL5	C	569	576	Right-handed alpha
Helix 105	AL6	C	577	579	Right-handed 310
Helix 106	AL7	C	585	601	Right-handed alpha
Helix 107	AL8	C	632	641	Right-handed alpha
Helix 108	AL9	C	649	653	Right-handed 310
Helix 109	AM1	D	13	23	Right-handed alpha
Helix 110	AM2	D	36	44	Right-handed alpha
Helix 111	AM3	D	54	59	Right-handed alpha
Helix 112	AM4	D	60	68	Right-handed alpha
Helix 113	AM5	D	75	91	Right-handed alpha
Helix 114	AM6	D	132	140	Right-handed alpha
Helix 115	AM7	D	156	167	Right-handed alpha
Helix 116	AM8	D	168	170	Right-handed 310
Helix 117	AM9	D	197	200	Right-handed 310
Helix 118	AN1	D	201	207	Right-handed 310
Helix 119	AN2	D	208	217	Right-handed alpha
Helix 120	AN3	D	229	234	Right-handed alpha
Helix 121	AN4	D	235	238	Right-handed 310
Helix 122	AN5	D	261	270	Right-handed alpha
Helix 123	AN6	D	272	279	Right-handed alpha
Helix 124	AN7	D	285	292	Right-handed alpha
Helix 125	AN8	D	347	349	Right-handed 310
Helix 126	AN9	D	376	393	Right-handed alpha
Helix 127	AO1	D	393	402	Right-handed alpha
Helix 128	AO2	D	403	416	Right-handed alpha
Helix 129	AO3	D	429	442	Right-handed alpha
Helix 130	AO4	D	446	450	Right-handed 310
Helix 131	AO5	D	452	461	Right-handed alpha
Helix 132	AO6	D	465	470	Right-handed 310
Helix 133	AO7	D	479	491	Right-handed alpha
Helix 134	AO8	D	494	504	Right-handed alpha
Helix 135	AO9	D	508	517	Right-handed alpha
Helix 136	AP1	D	526	532	Right-handed 310
Helix 137	AP2	D	533	549	Right-handed alpha
Helix 138	AP3	D	558	569	Right-handed alpha
Helix 139	AP4	D	569	576	Right-handed alpha
Helix 140	AP5	D	577	579	Right-handed 310
Helix 141	AP6	D	585	601	Right-handed alpha
Helix 142	AP7	D	632	640	Right-handed alpha
Helix 143	AP8	D	641	643	Right-handed 310
Helix 144	AP9	D	649	653	Right-handed 310

There are 36 sheets in PDB entry 8CJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	7	parallel
Strand 4	A	119	126	parallel
Strand 5	A	109	113	anti-parallel
Strand 6	A	99	104	anti-parallel
Strand 7	A	335	338	parallel
Strand 8	A	342	343	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	7	parallel
Strand 4	A	119	126	parallel
Strand 5	A	363	365	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	330	331	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	299	first strand
Strand 2	A	172	177	parallel
Strand 3	A	149	152	parallel
Strand 4	A	322	324	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	257	259	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	189	first strand
Strand 2	A	192	195	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	310	313	anti-parallel
Strand 3	A	316	319	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	356	357	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	427	428	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	27	31	parallel
Strand 3	B	2	7	parallel
Strand 4	B	118	126	parallel
Strand 5	B	109	113	anti-parallel
Strand 6	B	99	104	anti-parallel
Strand 7	B	335	338	parallel
Strand 8	B	342	343	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	27	31	parallel
Strand 3	B	2	7	parallel
Strand 4	B	118	126	parallel
Strand 5	B	363	365	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	330	331	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	299	first strand
Strand 2	B	172	177	parallel
Strand 3	B	149	152	parallel
Strand 4	B	322	324	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	257	259	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	189	first strand
Strand 2	B	192	195	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	310	313	anti-parallel
Strand 3	B	316	319	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	356	357	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	427	428	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	27	31	parallel
Strand 3	C	2	7	parallel
Strand 4	C	118	126	parallel
Strand 5	C	109	113	anti-parallel
Strand 6	C	99	104	anti-parallel
Strand 7	C	335	338	parallel
Strand 8	C	342	343	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	27	31	parallel
Strand 3	C	2	7	parallel
Strand 4	C	118	126	parallel
Strand 5	C	363	365	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	330	331	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	299	first strand
Strand 2	C	172	177	parallel
Strand 3	C	149	152	parallel
Strand 4	C	322	324	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	184	first strand
Strand 2	C	257	259	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	189	first strand
Strand 2	C	192	195	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	313	anti-parallel
Strand 3	C	316	319	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	352	first strand
Strand 2	C	356	357	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	427	428	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	27	31	parallel
Strand 3	D	2	7	parallel
Strand 4	D	118	126	parallel
Strand 5	D	109	113	anti-parallel
Strand 6	D	99	104	anti-parallel
Strand 7	D	335	338	parallel
Strand 8	D	342	343	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	27	31	parallel
Strand 3	D	2	7	parallel
Strand 4	D	118	126	parallel
Strand 5	D	363	365	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	330	331	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	299	first strand
Strand 2	D	172	177	parallel
Strand 3	D	149	152	parallel
Strand 4	D	322	324	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	184	first strand
Strand 2	D	257	259	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	189	first strand
Strand 2	D	192	195	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	313	anti-parallel
Strand 3	D	316	319	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	352	first strand
Strand 2	D	356	357	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	427	428	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJE