Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CJH entry

There are 2 chains in PDB entry 8CJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 696
B	MET 1	THR 646

There are132 helices in PDB entry 8CJH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	33	Right-handed alpha
Helix 2	AA2	A	56	59	Right-handed 310
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	78	95	Right-handed alpha
Helix 6	AA6	A	115	121	Right-handed alpha
Helix 7	AA7	A	122	125	Right-handed 310
Helix 8	AA8	A	127	132	Right-handed alpha
Helix 9	AA9	A	133	142	Right-handed alpha
Helix 10	AB1	A	144	154	Right-handed alpha
Helix 11	AB2	A	165	167	Right-handed 310
Helix 12	AB3	A	168	183	Right-handed alpha
Helix 13	AB4	A	198	202	Right-handed 310
Helix 14	AB5	A	242	248	Right-handed alpha
Helix 15	AB6	A	275	290	Right-handed alpha
Helix 16	AB7	A	293	297	Right-handed 310
Helix 17	AB8	A	307	323	Right-handed alpha
Helix 18	AB9	A	337	342	Right-handed alpha
Helix 19	AC1	A	347	362	Right-handed alpha
Helix 20	AC2	A	375	379	Right-handed 310
Helix 21	AC3	A	444	462	Right-handed alpha
Helix 22	AC4	A	466	477	Right-handed alpha
Helix 23	AC5	A	491	502	Right-handed alpha
Helix 24	AC6	A	524	533	Right-handed alpha
Helix 25	AC7	A	535	546	Right-handed alpha
Helix 26	AC8	A	552	558	Right-handed alpha
Helix 27	AC9	A	560	580	Right-handed alpha
Helix 28	AD1	A	590	601	Right-handed alpha
Helix 29	AD2	A	604	615	Right-handed alpha
Helix 30	AD3	A	642	658	Right-handed alpha
Helix 31	AD4	A	663	671	Right-handed alpha
Helix 32	AD5	B	22	33	Right-handed alpha
Helix 33	AD6	B	56	59	Right-handed 310
Helix 34	AD7	B	63	68	Right-handed alpha
Helix 35	AD8	B	70	77	Right-handed alpha
Helix 36	AD9	B	78	95	Right-handed alpha
Helix 37	AE1	B	115	121	Right-handed alpha
Helix 38	AE2	B	122	124	Right-handed 310
Helix 39	AE3	B	125	132	Right-handed alpha
Helix 40	AE4	B	133	142	Right-handed alpha
Helix 41	AE5	B	144	154	Right-handed alpha
Helix 42	AE6	B	165	167	Right-handed 310
Helix 43	AE7	B	168	183	Right-handed alpha
Helix 44	AE8	B	198	202	Right-handed 310
Helix 45	AE9	B	242	248	Right-handed alpha
Helix 46	AF1	B	275	290	Right-handed alpha
Helix 47	AF2	B	293	297	Right-handed 310
Helix 48	AF3	B	307	323	Right-handed alpha
Helix 49	AF4	B	337	342	Right-handed alpha
Helix 50	AF5	B	347	362	Right-handed alpha
Helix 51	AF6	B	375	379	Right-handed 310
Helix 52	AF7	B	444	462	Right-handed alpha
Helix 53	AF8	B	466	477	Right-handed alpha
Helix 54	AF9	B	491	502	Right-handed alpha
Helix 55	AG1	B	524	533	Right-handed alpha
Helix 56	AG2	B	535	546	Right-handed alpha
Helix 57	AG3	B	552	558	Right-handed alpha
Helix 58	AG4	B	560	580	Right-handed alpha
Helix 59	AG5	B	590	601	Right-handed alpha
Helix 60	AG6	B	604	615	Right-handed alpha
Helix 61	AG7	B	642	658	Right-handed alpha
Helix 62	AG8	B	662	671	Right-handed alpha
Helix 63	AG9	C	22	33	Right-handed alpha
Helix 64	AH1	C	56	59	Right-handed 310
Helix 65	AH2	C	63	68	Right-handed alpha
Helix 66	AH3	C	70	77	Right-handed alpha
Helix 67	AH4	C	78	95	Right-handed alpha
Helix 68	AH5	C	115	121	Right-handed alpha
Helix 69	AH6	C	122	125	Right-handed 310
Helix 70	AH7	C	127	132	Right-handed alpha
Helix 71	AH8	C	133	142	Right-handed alpha
Helix 72	AH9	C	144	154	Right-handed alpha
Helix 73	AI1	C	165	167	Right-handed 310
Helix 74	AI2	C	168	183	Right-handed alpha
Helix 75	AI3	C	198	202	Right-handed 310
Helix 76	AI4	C	242	248	Right-handed alpha
Helix 77	AI5	C	275	290	Right-handed alpha
Helix 78	AI6	C	293	297	Right-handed 310
Helix 79	AI7	C	307	323	Right-handed alpha
Helix 80	AI8	C	337	342	Right-handed alpha
Helix 81	AI9	C	347	362	Right-handed alpha
Helix 82	AJ1	C	375	379	Right-handed 310
Helix 83	AJ2	C	444	462	Right-handed alpha
Helix 84	AJ3	C	466	477	Right-handed alpha
Helix 85	AJ4	C	491	502	Right-handed alpha
Helix 86	AJ5	C	524	533	Right-handed alpha
Helix 87	AJ6	C	535	546	Right-handed alpha
Helix 88	AJ7	C	552	558	Right-handed alpha
Helix 89	AJ8	C	560	580	Right-handed alpha
Helix 90	AJ9	C	590	601	Right-handed alpha
Helix 91	AK1	C	604	615	Right-handed alpha
Helix 92	AK2	C	642	658	Right-handed alpha
Helix 93	AK3	C	662	671	Right-handed alpha
Helix 94	AK4	D	22	33	Right-handed alpha
Helix 95	AK5	D	56	59	Right-handed 310
Helix 96	AK6	D	63	68	Right-handed alpha
Helix 97	AK7	D	70	77	Right-handed alpha
Helix 98	AK8	D	78	95	Right-handed alpha
Helix 99	AK9	D	115	121	Right-handed alpha
Helix 100	AL1	D	122	124	Right-handed 310
Helix 101	AL2	D	125	132	Right-handed alpha
Helix 102	AL3	D	133	142	Right-handed alpha
Helix 103	AL4	D	144	154	Right-handed alpha
Helix 104	AL5	D	165	167	Right-handed 310
Helix 105	AL6	D	168	183	Right-handed alpha
Helix 106	AL7	D	198	202	Right-handed 310
Helix 107	AL8	D	242	248	Right-handed alpha
Helix 108	AL9	D	275	290	Right-handed alpha
Helix 109	AM1	D	293	297	Right-handed 310
Helix 110	AM2	D	307	323	Right-handed alpha
Helix 111	AM3	D	337	342	Right-handed alpha
Helix 112	AM4	D	347	362	Right-handed alpha
Helix 113	AM5	D	375	379	Right-handed 310
Helix 114	AM6	D	444	462	Right-handed alpha
Helix 115	AM7	D	466	477	Right-handed alpha
Helix 116	AM8	D	491	502	Right-handed alpha
Helix 117	AM9	D	524	533	Right-handed alpha
Helix 118	AN1	D	535	546	Right-handed alpha
Helix 119	AN2	D	552	558	Right-handed alpha
Helix 120	AN3	D	560	580	Right-handed alpha
Helix 121	AN4	D	590	601	Right-handed alpha
Helix 122	AN5	D	604	615	Right-handed alpha
Helix 123	AN6	D	642	658	Right-handed alpha
Helix 124	AN7	D	662	671	Right-handed alpha
Helix 125	AN8	E	713	730	Right-handed alpha
Helix 126	AN9	E	746	762	Right-handed alpha
Helix 127	AO1	E	766	772	Right-handed alpha
Helix 128	AO2	E	775	783	Right-handed alpha
Helix 129	AO3	F	713	730	Right-handed alpha
Helix 130	AO4	F	746	762	Right-handed alpha
Helix 131	AO5	F	766	772	Right-handed alpha
Helix 132	AO6	F	775	783	Right-handed alpha

There are 22 sheets in PDB entry 8CJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	332	335	parallel
Strand 3	A	299	301	parallel
Strand 4	A	402	408	parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	254	263	anti-parallel
Strand 7	A	8	16	anti-parallel
Strand 8	A	233	241	anti-parallel
Strand 9	A	188	195	anti-parallel
Strand 10	A	106	112	parallel
Strand 11	A	160	164	parallel
Strand 12	B	160	164	anti-parallel
Strand 13	B	106	112	parallel
Strand 14	B	188	195	parallel
Strand 15	B	233	241	anti-parallel
Strand 16	B	8	16	anti-parallel
Strand 17	B	254	263	anti-parallel
Strand 18	B	413	420	anti-parallel
Strand 19	B	402	408	anti-parallel
Strand 20	B	299	301	parallel
Strand 21	B	332	335	parallel
Strand 22	B	385	387	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	204	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	688	689	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	392	393	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	442	first strand
Strand 2	A	483	489	anti-parallel
Strand 3	A	505	506	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	588	first strand
Strand 2	A	513	517	parallel
Strand 3	A	633	636	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	47	51	anti-parallel
Strand 3	B	204	206	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	688	689	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	392	393	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	442	first strand
Strand 2	B	483	489	anti-parallel
Strand 3	B	505	506	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	588	first strand
Strand 2	B	513	517	parallel
Strand 3	B	633	636	parallel

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There are 22 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	387	first strand
Strand 2	C	332	335	parallel
Strand 3	C	299	301	parallel
Strand 4	C	402	408	parallel
Strand 5	C	413	420	anti-parallel
Strand 6	C	254	263	anti-parallel
Strand 7	C	8	16	anti-parallel
Strand 8	C	233	241	anti-parallel
Strand 9	C	188	195	anti-parallel
Strand 10	C	106	112	parallel
Strand 11	C	160	164	parallel
Strand 12	D	160	164	anti-parallel
Strand 13	D	106	112	parallel
Strand 14	D	188	195	parallel
Strand 15	D	233	241	anti-parallel
Strand 16	D	8	16	anti-parallel
Strand 17	D	254	263	anti-parallel
Strand 18	D	413	420	anti-parallel
Strand 19	D	402	408	anti-parallel
Strand 20	D	299	301	parallel
Strand 21	D	332	335	parallel
Strand 22	D	385	387	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	47	51	anti-parallel
Strand 3	C	204	206	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	688	689	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	392	393	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	442	first strand
Strand 2	C	483	489	anti-parallel
Strand 3	C	505	506	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	588	first strand
Strand 2	C	513	517	parallel
Strand 3	C	633	636	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	204	206	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	688	689	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	365	first strand
Strand 2	D	392	393	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	442	first strand
Strand 2	D	483	489	anti-parallel
Strand 3	D	505	506	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	588	first strand
Strand 2	D	513	517	parallel
Strand 3	D	633	636	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJH