Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CJI entry

There is 1 chain in PDB entry 8CJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 104ILE 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8CJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 114Right-handed 310
Helix 2
AA2
A
115 120Right-handed alpha
Helix 3
AA3
A
138 155Right-handed alpha
Helix 4
AA4
A
167 189Right-handed alpha
Helix 5
AA5
A
190 205Right-handed alpha
Helix 6
AA6
A
213 226Right-handed alpha
Helix 7
AA7
A
237 246Right-handed alpha
Helix 8
AA8
A
269 277Right-handed alpha
Helix 9
AA9
A
277 282Right-handed alpha
Helix 10
AB1
A
283 298Right-handed alpha
Helix 11
AB2
A
301 314Right-handed alpha
Helix 12
AB3
A
331 336Right-handed alpha
Helix 13
AB4
A
337 345Right-handed alpha
Helix 14
AB5
A
355 360Right-handed alpha
Helix 15
AB6
A
378 393Right-handed alpha
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There are 3 sheets in PDB entry 8CJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
249 252parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
372 376parallel
Strand 4
A
350 353parallel
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