Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 8CJV entry
There are 2 chains in PDB entry 8CJV
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
THR 41 | LYS 294 |
B
|
THR 41 | VAL 234 |
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There are no helices in PDB entry
8CJV
There are
15 sheets in PDB entry 8CJV. Click on sheet of
interest to get list of strands forming it:
AA1,
AA2,
AA3,
AA4,
AA5,
AA6,
AA7,
AA8,
AA9,
AB1,
AB2,
AB3,
AB4,
AB5,
AB6,
There are 3
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 52 |
54 | first strand |
| Strand 2 |
A
| 67 |
72 | anti-parallel |
| Strand 3 |
A
| 85 |
88 | anti-parallel |
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There are 2
strands in AA2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 76 |
78 | first strand |
| Strand 2 |
A
| 102 |
104 | anti-parallel |
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There are 4
strands in AA3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 116 |
119 | first strand |
| Strand 2 |
A
| 130 |
135 | anti-parallel |
| Strand 3 |
A
| 146 |
150 | anti-parallel |
| Strand 4 |
A
| 158 |
159 | anti-parallel |
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There are 2
strands in AA4 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 139 |
142 | first strand |
| Strand 2 |
A
| 165 |
168 | anti-parallel |
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There are 3
strands in AA5 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 180 |
182 | first strand |
| Strand 2 |
A
| 195 |
200 | anti-parallel |
| Strand 3 |
A
| 216 |
218 | anti-parallel |
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There are 2
strands in AA6 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 210 |
211 | first strand |
| Strand 2 |
A
| 232 |
233 | anti-parallel |
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There are 2
strands in AA7 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 236 |
237 | first strand |
| Strand 2 |
A
| 255 |
256 | anti-parallel |
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There are 4
strands in AA8 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 245 |
247 | first strand |
| Strand 2 |
A
| 260 |
265 | anti-parallel |
| Strand 3 |
A
| 276 |
279 | anti-parallel |
| Strand 4 |
A
| 285 |
286 | anti-parallel |
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There are 2
strands in AA9 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 270 |
271 | first strand |
| Strand 2 |
A
| 292 |
293 | anti-parallel |
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There are 3
strands in AB1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 52 |
54 | first strand |
| Strand 2 |
B
| 67 |
72 | anti-parallel |
| Strand 3 |
B
| 86 |
88 | anti-parallel |
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There are 2
strands in AB2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 76 |
78 | first strand |
| Strand 2 |
B
| 102 |
104 | anti-parallel |
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There are 4
strands in AB3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 116 |
119 | first strand |
| Strand 2 |
B
| 130 |
135 | anti-parallel |
| Strand 3 |
B
| 146 |
150 | anti-parallel |
| Strand 4 |
B
| 158 |
159 | anti-parallel |
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There are 2
strands in AB4 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 139 |
142 | first strand |
| Strand 2 |
B
| 165 |
168 | anti-parallel |
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There are 3
strands in AB5 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 180 |
182 | first strand |
| Strand 2 |
B
| 195 |
200 | anti-parallel |
| Strand 3 |
B
| 216 |
218 | anti-parallel |
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There are 2
strands in AB6 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 210 |
212 | first strand |
| Strand 2 |
B
| 231 |
233 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il