Analysis of interatomic Contacts of Structural Units in PDB entry:
8CJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CJW entry

There is 1 chain in PDB entry 8CJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20GLY 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8CJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 42Right-handed alpha
Helix 2
AA2
A
48 64Right-handed alpha
Helix 3
AA3
A
94 105Right-handed alpha
Helix 4
AA4
A
107 111Right-handed 310
Helix 5
AA5
A
113 133Right-handed alpha
Helix 6
AA6
A
136 143Right-handed alpha
Helix 7
AA7
A
145 152Right-handed 310
Helix 8
AA8
A
158 163Right-handed alpha
Helix 9
AA9
A
164 169Right-handed 310
Helix 10
AB1
A
170 182Right-handed alpha
Helix 11
AB2
A
183 184Right-handed 310
Helix 12
AB3
A
197 198Right-handed 310
Helix 13
AB4
A
199 215Right-handed alpha
Helix 14
AB5
A
217 229Right-handed alpha
Helix 15
AB6
A
234 242Right-handed alpha
Helix 16
AB7
A
256 262Right-handed alpha
Helix 17
AB8
A
273 287Right-handed alpha
Helix 18
AB9
A
295 297Right-handed 310
Helix 19
AC1
A
298 312Right-handed alpha
Helix 20
AC2
A
313 316Right-handed 310
Helix 21
AC3
A
317 326Right-handed alpha
Helix 22
AC4
A
331 335Right-handed 310
Helix 23
AC5
A
340 344Right-handed 310
Helix 24
AC6
A
408 423Right-handed alpha
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There are 3 sheets in PDB entry 8CJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 79first strand
Strand 2
A
86 93anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
345 349anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
431 433anti-parallel
Strand 3
A
439 440anti-parallel
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