Analysis of interatomic Contacts of Structural Units in PDB entry:
8CK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CK0 entry

There is 1 chain in PDB entry 8CK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4MET 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8CK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
60 78Right-handed alpha
Helix 4
AA4
A
91 97Right-handed alpha
Helix 5
AA5
A
97 118Right-handed alpha
Helix 6
AA6
A
119 135Right-handed alpha
Helix 7
AA7
A
180 187Right-handed alpha
Helix 8
AA8
A
188 192Right-handed 310
Helix 9
AA9
A
193 202Right-handed alpha
Helix 10
AB1
A
274 302Right-handed alpha
Helix 11
AB2
A
314 318Right-handed 310
Helix 12
AB3
A
345 364Right-handed alpha
Helix 13
AB4
A
401 406Right-handed alpha
Helix 14
AB5
A
408 422Right-handed alpha
Helix 15
AB6
A
447 467Right-handed alpha
Helix 16
AB7
A
468 470Right-handed 310
Helix 17
AB8
A
471 477Right-handed 310
Helix 18
AB9
A
479 492Right-handed alpha
Helix 19
AC1
A
494 498Right-handed 310
Helix 20
AC2
A
500 523Right-handed alpha
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There are 4 sheets in PDB entry 8CK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
438 440anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
258 259anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
169 179anti-parallel
Strand 3
A
208 217anti-parallel
Strand 4
A
233 238anti-parallel
Strand 5
A
249 253anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
337 338anti-parallel
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