Analysis of interatomic Contacts of Structural Units in PDB entry:
8CK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CK9 entry

There is 1 chain in PDB entry 8CK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18GLU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8CK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 27Right-handed alpha
Helix 2
AA2
A
56 59Right-handed 310
Helix 3
AA3
A
61 87Right-handed alpha
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
154 168Right-handed alpha
Helix 9
AA9
A
185 189Right-handed 310
Helix 10
AB1
A
213 221Right-handed alpha
Helix 11
AB2
A
227 234Right-handed 310
Helix 12
AB3
A
247 253Right-handed alpha
Helix 13
AB4
A
255 264Right-handed alpha
Helix 14
AB5
A
299 305Right-handed alpha
Helix 15
AB6
A
306 309Right-handed 310
Helix 16
AB7
A
343 346Right-handed 310
Helix 17
AB8
A
347 358Right-handed alpha
Helix 18
AB9
A
360 364Right-handed 310
Helix 19
AC1
A
386 391Right-handed alpha
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There are 3 sheets in PDB entry 8CK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
173 182anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
331 341anti-parallel
Strand 3
A
319 325anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
331 341anti-parallel
Strand 3
A
237 246anti-parallel
Strand 4
A
366 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il