Analysis of interatomic Contacts of Structural Units in PDB entry:
8CKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CKN entry

There is 1 chain in PDB entry 8CKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34SER 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8CKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
76 85Right-handed alpha
Helix 4
AA4
A
92 97Right-handed alpha
Helix 5
AA5
A
113 123Right-handed alpha
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
127 133Right-handed alpha
Helix 8
AA8
A
134 151Right-handed alpha
Helix 9
AA9
A
157 161Right-handed alpha
Helix 10
AB1
A
164 175Right-handed alpha
Helix 11
AB2
A
177 179Right-handed 310
Helix 12
AB3
A
180 195Right-handed alpha
Helix 13
AB4
A
201 225Right-handed alpha
Helix 14
AB5
A
229 234Right-handed alpha
Helix 15
AB6
A
242 257Right-handed alpha
Helix 16
AB7
A
258 274Right-handed alpha
Helix 17
AB8
A
275 283Right-handed alpha
Helix 18
AB9
A
285 300Right-handed alpha
Helix 19
AC1
A
330 335Right-handed alpha
Helix 20
AC2
A
361 365Right-handed 310
Helix 21
AC3
A
368 387Right-handed alpha
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There are 3 sheets in PDB entry 8CKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
326 329parallel
Strand 4
A
306 310anti-parallel
Strand 5
A
90 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
413 415anti-parallel
Strand 3
A
391 392anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il