Analysis of interatomic Contacts of Structural Units in PDB entry:
8CKP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CKP entry

There are 10 chains in PDB entry 8CKP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 6	HIS 307
F	SER 2	HIS 308
G	ARG 9	HIS 308
H	SER 5	HIS 308
I	ALA 8	HIS 307
J	ALA 8	HIS 309
A	SER 5	HIS 309
B	SER 6	HIS 309
C	SER 5	HIS 309
E	SER 6	HIS 308

There are165 helices in PDB entry 8CKP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	6	16	Right-handed alpha
Helix 2	AA2	D	66	69	Right-handed 310
Helix 3	AA3	D	70	78	Right-handed alpha
Helix 4	AA4	D	103	119	Right-handed alpha
Helix 5	AA5	D	130	140	Right-handed alpha
Helix 6	AA6	D	142	144	Right-handed 310
Helix 7	AA7	D	162	175	Right-handed alpha
Helix 8	AA8	D	175	183	Right-handed alpha
Helix 9	AA9	D	183	188	Right-handed alpha
Helix 10	AB1	D	188	193	Right-handed alpha
Helix 11	AB2	D	196	200	Right-handed 310
Helix 12	AB3	D	201	212	Right-handed alpha
Helix 13	AB4	D	216	229	Right-handed alpha
Helix 14	AB5	D	229	238	Right-handed alpha
Helix 15	AB6	D	239	243	Right-handed 310
Helix 16	AB7	D	260	271	Right-handed alpha
Helix 17	AB8	D	285	290	Right-handed alpha
Helix 18	AB9	D	291	293	Right-handed 310
Helix 19	AC1	D	294	306	Right-handed alpha
Helix 20	AC2	F	3	19	Right-handed alpha
Helix 21	AC3	F	20	23	Right-handed 310
Helix 22	AC4	F	66	69	Right-handed 310
Helix 23	AC5	F	70	78	Right-handed alpha
Helix 24	AC6	F	103	119	Right-handed alpha
Helix 25	AC7	F	130	142	Right-handed alpha
Helix 26	AC8	F	162	171	Right-handed alpha
Helix 27	AC9	F	201	213	Right-handed alpha
Helix 28	AD1	F	216	229	Right-handed alpha
Helix 29	AD2	F	229	238	Right-handed alpha
Helix 30	AD3	F	239	243	Right-handed 310
Helix 31	AD4	F	260	271	Right-handed alpha
Helix 32	AD5	F	285	290	Right-handed alpha
Helix 33	AD6	F	291	293	Right-handed 310
Helix 34	AD7	F	294	306	Right-handed alpha
Helix 35	AD8	G	10	19	Right-handed alpha
Helix 36	AD9	G	66	69	Right-handed 310
Helix 37	AE1	G	70	78	Right-handed alpha
Helix 38	AE2	G	103	119	Right-handed alpha
Helix 39	AE3	G	130	140	Right-handed alpha
Helix 40	AE4	G	142	144	Right-handed 310
Helix 41	AE5	G	162	183	Right-handed alpha
Helix 42	AE6	G	183	188	Right-handed alpha
Helix 43	AE7	G	188	193	Right-handed alpha
Helix 44	AE8	G	196	200	Right-handed 310
Helix 45	AE9	G	201	212	Right-handed alpha
Helix 46	AF1	G	216	229	Right-handed alpha
Helix 47	AF2	G	229	239	Right-handed alpha
Helix 48	AF3	G	240	243	Right-handed 310
Helix 49	AF4	G	260	271	Right-handed alpha
Helix 50	AF5	G	285	290	Right-handed alpha
Helix 51	AF6	G	291	293	Right-handed 310
Helix 52	AF7	G	294	307	Right-handed alpha
Helix 53	AF8	H	6	19	Right-handed alpha
Helix 54	AF9	H	66	69	Right-handed 310
Helix 55	AG1	H	70	78	Right-handed alpha
Helix 56	AG2	H	103	119	Right-handed alpha
Helix 57	AG3	H	130	142	Right-handed alpha
Helix 58	AG4	H	162	171	Right-handed alpha
Helix 59	AG5	H	201	212	Right-handed alpha
Helix 60	AG6	H	217	229	Right-handed alpha
Helix 61	AG7	H	229	238	Right-handed alpha
Helix 62	AG8	H	239	243	Right-handed 310
Helix 63	AG9	H	260	271	Right-handed alpha
Helix 64	AH1	H	285	290	Right-handed alpha
Helix 65	AH2	H	291	293	Right-handed 310
Helix 66	AH3	H	294	306	Right-handed alpha
Helix 67	AH4	H	307	308	Right-handed 310
Helix 68	AH5	I	8	8	Right-handed 310
Helix 69	AH6	I	9	18	Right-handed alpha
Helix 70	AH7	I	66	69	Right-handed 310
Helix 71	AH8	I	70	78	Right-handed alpha
Helix 72	AH9	I	103	119	Right-handed alpha
Helix 73	AI1	I	130	140	Right-handed alpha
Helix 74	AI2	I	142	144	Right-handed 310
Helix 75	AI3	I	162	175	Right-handed alpha
Helix 76	AI4	I	175	183	Right-handed alpha
Helix 77	AI5	I	183	188	Right-handed alpha
Helix 78	AI6	I	190	194	Right-handed 310
Helix 79	AI7	I	196	200	Right-handed 310
Helix 80	AI8	I	201	212	Right-handed alpha
Helix 81	AI9	I	216	229	Right-handed alpha
Helix 82	AJ1	I	229	238	Right-handed alpha
Helix 83	AJ2	I	239	243	Right-handed 310
Helix 84	AJ3	I	260	271	Right-handed alpha
Helix 85	AJ4	I	285	290	Right-handed alpha
Helix 86	AJ5	I	294	306	Right-handed alpha
Helix 87	AJ6	J	9	20	Right-handed alpha
Helix 88	AJ7	J	66	69	Right-handed 310
Helix 89	AJ8	J	70	78	Right-handed alpha
Helix 90	AJ9	J	103	119	Right-handed alpha
Helix 91	AK1	J	130	142	Right-handed alpha
Helix 92	AK2	J	162	171	Right-handed alpha
Helix 93	AK3	J	201	212	Right-handed alpha
Helix 94	AK4	J	216	229	Right-handed alpha
Helix 95	AK5	J	229	238	Right-handed alpha
Helix 96	AK6	J	239	243	Right-handed 310
Helix 97	AK7	J	260	271	Right-handed alpha
Helix 98	AK8	J	285	291	Right-handed alpha
Helix 99	AK9	J	294	306	Right-handed alpha
Helix 100	AL1	J	307	309	Right-handed 310
Helix 101	AL2	A	6	20	Right-handed alpha
Helix 102	AL3	A	21	23	Right-handed 310
Helix 103	AL4	A	66	69	Right-handed 310
Helix 104	AL5	A	70	78	Right-handed alpha
Helix 105	AL6	A	103	119	Right-handed alpha
Helix 106	AL7	A	130	142	Right-handed alpha
Helix 107	AL8	A	162	171	Right-handed alpha
Helix 108	AL9	A	201	213	Right-handed alpha
Helix 109	AM1	A	216	229	Right-handed alpha
Helix 110	AM2	A	229	238	Right-handed alpha
Helix 111	AM3	A	239	243	Right-handed 310
Helix 112	AM4	A	260	271	Right-handed alpha
Helix 113	AM5	A	285	290	Right-handed alpha
Helix 114	AM6	A	291	293	Right-handed 310
Helix 115	AM7	A	294	307	Right-handed alpha
Helix 116	AM8	B	7	19	Right-handed alpha
Helix 117	AM9	B	66	69	Right-handed 310
Helix 118	AN1	B	70	78	Right-handed alpha
Helix 119	AN2	B	103	119	Right-handed alpha
Helix 120	AN3	B	130	142	Right-handed alpha
Helix 121	AN4	B	162	171	Right-handed alpha
Helix 122	AN5	B	201	213	Right-handed alpha
Helix 123	AN6	B	216	229	Right-handed alpha
Helix 124	AN7	B	229	238	Right-handed alpha
Helix 125	AN8	B	239	243	Right-handed 310
Helix 126	AN9	B	260	271	Right-handed alpha
Helix 127	AO1	B	285	290	Right-handed alpha
Helix 128	AO2	B	291	293	Right-handed 310
Helix 129	AO3	B	294	306	Right-handed alpha
Helix 130	AO4	B	307	309	Right-handed 310
Helix 131	AO5	C	6	20	Right-handed alpha
Helix 132	AO6	C	21	23	Right-handed 310
Helix 133	AO7	C	66	69	Right-handed 310
Helix 134	AO8	C	70	78	Right-handed alpha
Helix 135	AO9	C	103	119	Right-handed alpha
Helix 136	AP1	C	130	140	Right-handed alpha
Helix 137	AP2	C	142	144	Right-handed 310
Helix 138	AP3	C	162	183	Right-handed alpha
Helix 139	AP4	C	183	188	Right-handed alpha
Helix 140	AP5	C	190	194	Right-handed 310
Helix 141	AP6	C	201	212	Right-handed alpha
Helix 142	AP7	C	216	229	Right-handed alpha
Helix 143	AP8	C	229	238	Right-handed alpha
Helix 144	AP9	C	239	243	Right-handed 310
Helix 145	AQ1	C	260	271	Right-handed alpha
Helix 146	AQ2	C	285	290	Right-handed alpha
Helix 147	AQ3	C	293	307	Right-handed alpha
Helix 148	AQ4	E	7	19	Right-handed alpha
Helix 149	AQ5	E	20	23	Right-handed 310
Helix 150	AQ6	E	66	69	Right-handed 310
Helix 151	AQ7	E	70	78	Right-handed alpha
Helix 152	AQ8	E	103	119	Right-handed alpha
Helix 153	AQ9	E	130	140	Right-handed alpha
Helix 154	AR1	E	142	144	Right-handed 310
Helix 155	AR2	E	162	183	Right-handed alpha
Helix 156	AR3	E	183	188	Right-handed alpha
Helix 157	AR4	E	188	194	Right-handed alpha
Helix 158	AR5	E	201	212	Right-handed alpha
Helix 159	AR6	E	216	229	Right-handed alpha
Helix 160	AR7	E	229	238	Right-handed alpha
Helix 161	AR8	E	239	243	Right-handed 310
Helix 162	AR9	E	260	271	Right-handed alpha
Helix 163	AS1	E	285	290	Right-handed alpha
Helix 164	AS2	E	291	293	Right-handed 310
Helix 165	AS3	E	294	305	Right-handed alpha

There are 10 sheets in PDB entry 8CKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	41	47	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	56	60	parallel
Strand 5	D	123	128	parallel
Strand 6	D	146	152	parallel
Strand 7	D	248	253	parallel
Strand 8	D	274	279	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	41	47	anti-parallel
Strand 3	F	82	87	anti-parallel
Strand 4	F	56	60	parallel
Strand 5	F	123	128	parallel
Strand 6	F	146	152	parallel
Strand 7	F	248	253	parallel
Strand 8	F	274	279	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	37	first strand
Strand 2	G	40	47	anti-parallel
Strand 3	G	82	87	anti-parallel
Strand 4	G	56	60	parallel
Strand 5	G	123	128	parallel
Strand 6	G	146	152	parallel
Strand 7	G	248	253	parallel
Strand 8	G	274	279	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	37	first strand
Strand 2	H	40	47	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	56	60	parallel
Strand 5	H	123	128	parallel
Strand 6	H	146	152	parallel
Strand 7	H	248	253	parallel
Strand 8	H	274	279	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	36	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	82	86	anti-parallel
Strand 4	I	56	60	parallel
Strand 5	I	123	128	parallel
Strand 6	I	146	152	parallel
Strand 7	I	248	253	parallel
Strand 8	I	274	279	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	36	first strand
Strand 2	J	41	47	anti-parallel
Strand 3	J	82	86	anti-parallel
Strand 4	J	56	60	parallel
Strand 5	J	123	128	parallel
Strand 6	J	146	152	parallel
Strand 7	J	248	253	parallel
Strand 8	J	274	279	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	82	86	anti-parallel
Strand 4	A	56	60	parallel
Strand 5	A	123	128	parallel
Strand 6	A	146	152	parallel
Strand 7	A	248	253	parallel
Strand 8	A	274	279	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	40	47	anti-parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	56	60	parallel
Strand 5	B	123	128	parallel
Strand 6	B	146	152	parallel
Strand 7	B	248	253	parallel
Strand 8	B	274	279	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	41	47	anti-parallel
Strand 3	C	82	87	anti-parallel
Strand 4	C	56	60	parallel
Strand 5	C	123	128	parallel
Strand 6	C	146	152	parallel
Strand 7	C	248	253	parallel
Strand 8	C	274	279	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	37	first strand
Strand 2	E	40	47	anti-parallel
Strand 3	E	82	86	anti-parallel
Strand 4	E	56	60	parallel
Strand 5	E	123	128	parallel
Strand 6	E	146	152	parallel
Strand 7	E	248	253	parallel
Strand 8	E	274	279	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CKP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CKP